Literature DB >> 27028548

Chromatin structure and pre-mRNA processing work together.

Silvia Jimeno-González1, José C Reyes1.   

Abstract

Chromatin is the natural context for transcription elongation. However, the elongating RNA polymerase II (RNAPII) is forced to pause by the positioned nucleosomes present in gene bodies. Here, we briefly discuss the current results suggesting that those pauses could serve as a mechanism to coordinate transcription elongation with pre-mRNA processing. Further, histone post-translational modifications have been found to regulate the recruitment of factors involved in pre-mRNA processing. This view highlights the important regulatory role of the chromatin context in the whole process of the mature mRNA synthesis.

Keywords:  mRNA capping; nucleosome; promoter proximal pausing; splicing; transcription termination

Mesh:

Substances:

Year:  2016        PMID: 27028548      PMCID: PMC4984687          DOI: 10.1080/21541264.2016.1168507

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  55 in total

1.  Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

Authors:  M G Izban; D S Luse
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

2.  Genome-scale identification of nucleosome positions in S. cerevisiae.

Authors:  Guo-Cheng Yuan; Yuen-Jong Liu; Michael F Dion; Michael D Slack; Lani F Wu; Steven J Altschuler; Oliver J Rando
Journal:  Science       Date:  2005-06-16       Impact factor: 47.728

3.  BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing.

Authors:  Rui Guo; Lijuan Zheng; Juw Won Park; Ruitu Lv; Hao Chen; Fangfang Jiao; Wenqi Xu; Shirong Mu; Hong Wen; Jinsong Qiu; Zhentian Wang; Pengyuan Yang; Feizhen Wu; Jingyi Hui; Xiangdong Fu; Xiaobing Shi; Yujiang Geno Shi; Yi Xing; Fei Lan; Yang Shi
Journal:  Mol Cell       Date:  2014-09-25       Impact factor: 17.970

4.  Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase.

Authors:  Christopher M Weber; Srinivas Ramachandran; Steven Henikoff
Journal:  Mol Cell       Date:  2014-03-06       Impact factor: 17.970

5.  Relationship between nucleosome positioning and DNA methylation.

Authors:  Ramakrishna K Chodavarapu; Suhua Feng; Yana V Bernatavichute; Pao-Yang Chen; Hume Stroud; Yanchun Yu; Jonathan A Hetzel; Frank Kuo; Jin Kim; Shawn J Cokus; David Casero; Maria Bernal; Peter Huijser; Amander T Clark; Ute Krämer; Sabeeha S Merchant; Xiaoyu Zhang; Steven E Jacobsen; Matteo Pellegrini
Journal:  Nature       Date:  2010-05-30       Impact factor: 49.962

6.  Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor.

Authors:  Jian Li; David S Gilmour
Journal:  EMBO J       Date:  2013-05-24       Impact factor: 11.598

7.  Nucleosomes are well positioned in exons and carry characteristic histone modifications.

Authors:  Robin Andersson; Stefan Enroth; Alvaro Rada-Iglesias; Claes Wadelius; Jan Komorowski
Journal:  Genome Res       Date:  2009-08-17       Impact factor: 9.043

8.  Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing.

Authors:  Madapura M Pradeepa; Heidi G Sutherland; Jernej Ule; Graeme R Grimes; Wendy A Bickmore
Journal:  PLoS Genet       Date:  2012-05-17       Impact factor: 5.917

9.  Relationship between nucleosome positioning and progesterone-induced alternative splicing in breast cancer cells.

Authors:  Camilla Iannone; Andy Pohl; Panagiotis Papasaikas; Daniel Soronellas; Guillermo P Vicent; Miguel Beato; Juan ValcáRcel
Journal:  RNA       Date:  2015-03       Impact factor: 4.942

10.  Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications.

Authors:  Artur Veloso; Killeen S Kirkconnell; Brian Magnuson; Benjamin Biewen; Michelle T Paulsen; Thomas E Wilson; Mats Ljungman
Journal:  Genome Res       Date:  2014-04-08       Impact factor: 9.043

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  5 in total

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Authors:  John K Barrows; David T Long
Journal:  J Biol Chem       Date:  2019-11-15       Impact factor: 5.157

2.  The effects of MicroRNA deregulation on pre-RNA processing network in multiple myeloma.

Authors:  Sophia Adamia; Ivane Abiatari; Samir B Amin; Mariateresa Fulciniti; Stephane Minvielle; Cheng Li; Philippe Moreau; Herve Avet-Loiseau; Nikhil C Munshi; Kenneth C Anderson
Journal:  Leukemia       Date:  2019-06-10       Impact factor: 11.528

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Authors:  Fraser Thomas; Katie B Holmes; Sarah Kreuz; Peter Hillmen; Pascal F Lefevre
Journal:  Mol Oncol       Date:  2020-05-03       Impact factor: 6.603

4.  Broad domains of histone marks in the highly compact Paramecium macronuclear genome.

Authors:  Abdulrahman Salhab; Sivarajan Karunanithi; Franziska Drews; Miriam Cheaib; Martin Jung; Marcel H Schulz; Martin Simon
Journal:  Genome Res       Date:  2022-03-09       Impact factor: 9.438

5.  HDA6-dependent histone deacetylation regulates mRNA polyadenylation in Arabidopsis.

Authors:  Juncheng Lin; Fu-Yu Hung; Congting Ye; Liwei Hong; Yuan-Hsin Shih; Keqiang Wu; Qingshun Q Li
Journal:  Genome Res       Date:  2020-08-05       Impact factor: 9.043

  5 in total

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