Literature DB >> 27027925

Kinetics versus Thermodynamics in Virus Capsid Polymorphism.

Pepijn Moerman, Paul van der Schoot1, Willem Kegel.   

Abstract

Virus coat proteins spontaneously self-assemble into empty shells in aqueous solution under the appropriate physicochemical conditions, driven by an interaction free energy per bond on the order of 2-5 times the thermal energy kBT. For this seemingly modest interaction strength, each protein building block nonetheless gains a very large binding free energy, between 10 and 20 kBT. Because of this, there is debate about whether the assembly process is reversible or irreversible. Here we discuss capsid polymorphism observed in in vitro experiments from the perspective of nucleation theory and of the thermodynamics of mass action. We specifically consider the potential contribution of a curvature free energy term to the effective interaction potential between the proteins. From these models, we propose experiments that may conclusively reveal whether virus capsid assembly into a mixture of polymorphs is a reversible or an irreversible process.

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Year:  2016        PMID: 27027925     DOI: 10.1021/acs.jpcb.6b01953

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

Review 1.  Physical, chemical, and synthetic virology: Reprogramming viruses as controllable nanodevices.

Authors:  Maria Yanqing Chen; Susan S Butler; Weitong Chen; Junghae Suh
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2018-11-08

2.  Disassembly of Single Virus Capsids Monitored in Real Time with Multicycle Resistive-Pulse Sensing.

Authors:  Jinsheng Zhou; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2021-12-21       Impact factor: 6.986

3.  The different faces of mass action in virus assembly.

Authors:  Bart van der Holst; Willem K Kegel; Roya Zandi; Paul van der Schoot
Journal:  J Biol Phys       Date:  2018-04-03       Impact factor: 1.365

4.  The Dynamics of Viruslike Capsid Assembly and Disassembly.

Authors:  Suzanne B P E Timmermans; Alireza Ramezani; Toni Montalvo; Mark Nguyen; Paul van der Schoot; Jan C M van Hest; Roya Zandi
Journal:  J Am Chem Soc       Date:  2022-07-06       Impact factor: 16.383

5.  Beyond COVID-19: Do biothermodynamic properties allow predicting the future evolution of SARS-CoV-2 variants?

Authors:  Marko Popovic
Journal:  Microb Risk Anal       Date:  2022-08-31
  5 in total

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