Literature DB >> 27023848

Shared Molecular Mechanisms of Membrane Transporters.

David Drew1, Olga Boudker2.   

Abstract

The determination of the crystal structures of small-molecule transporters has shed light on the conformational changes that take place during structural isomerization from outward- to inward-facing states. Rather than using a simple rocking movement of two bundles around a central substrate-binding site, it has become clear that even the most simplistic transporters utilize rearrangements of nonrigid bodies. In the most dramatic cases, one bundle is fixed while the other, structurally divergent, bundle carries the substrate some 18 Å across the membrane, which in this review is termed an elevator alternating-access mechanism. Here, we compare and contrast rocker-switch, rocking-bundle, and elevator alternating-access mechanisms to highlight shared features and novel refinements to the basic alternating-access model.

Keywords:  alternating-access mechanisms; elevator model; membrane proteins; rocking-bundle model; secondary transporters; structural dynamics

Mesh:

Substances:

Year:  2016        PMID: 27023848     DOI: 10.1146/annurev-biochem-060815-014520

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  144 in total

1.  Specific Residues in a Purine Transporter Are Critical for Dimerization, ER Exit, and Function.

Authors:  Anezia Kourkoulou; Pothos Grevias; George Lambrinidis; Euan Pyle; Mariangela Dionysopoulou; Argyris Politis; Emmanuel Mikros; Bernadette Byrne; George Diallinas
Journal:  Genetics       Date:  2019-10-14       Impact factor: 4.562

2.  Continuous Constant pH Molecular Dynamics Simulations of Transmembrane Proteins.

Authors:  Yandong Huang; Jack A Henderson; Jana Shen
Journal:  Methods Mol Biol       Date:  2021

3.  Dissecting the proton transport pathway in electrogenic Na+/H+ antiporters.

Authors:  Povilas Uzdavinys; Mathieu Coinçon; Emmanuel Nji; Mama Ndi; Iven Winkelmann; Christoph von Ballmoos; David Drew
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-01       Impact factor: 11.205

4.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

5.  Investigation of the allosteric coupling mechanism in a glutamate transporter homolog via unnatural amino acid mutagenesis.

Authors:  Erika A Riederer; Francis I Valiyaveetil
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-22       Impact factor: 11.205

6.  Structure of the SLC4 transporter Bor1p in an inward-facing conformation.

Authors:  Nicolas Coudray; Sean L Seyler; Ralph Lasala; Zhening Zhang; Kathy M Clark; Mark E Dumont; Alexis Rohou; Oliver Beckstein; David L Stokes
Journal:  Protein Sci       Date:  2016-10-21       Impact factor: 6.725

Review 7.  It takes two to transport via an elevator.

Authors:  Bernadette Byrne
Journal:  Cell Res       Date:  2017-07-07       Impact factor: 25.617

8.  Dynamic distinctions in the Na+/Ca2+ exchanger adopting the inward- and outward-facing conformational states.

Authors:  Moshe Giladi; Liat van Dijk; Bosmat Refaeli; Lior Almagor; Reuben Hiller; Petr Man; Eric Forest; Daniel Khananshvili
Journal:  J Biol Chem       Date:  2017-06-01       Impact factor: 5.157

9.  Structural basis for substrate binding and specificity of a sodium-alanine symporter AgcS.

Authors:  Jinming Ma; Hsiang-Ting Lei; Francis E Reyes; Silvia Sanchez-Martinez; Maen F Sarhan; Johan Hattne; Tamir Gonen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-18       Impact factor: 11.205

Review 10.  A topologically diverse family of fluoride channels.

Authors:  Christian B Macdonald; Randy B Stockbridge
Journal:  Curr Opin Struct Biol       Date:  2017-05-14       Impact factor: 6.809

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