Literature DB >> 19649766

Retroelements and their impact on genome evolution and functioning.

Elena Gogvadze1, Anton Buzdin.   

Abstract

Retroelements comprise a considerable fraction of eukaryotic genomes. Since their initial discovery by Barbara McClintock in maize DNA, retroelements have been found in genomes of almost all organisms. First considered as a "junk DNA" or genomic parasites, they were shown to influence genome functioning and to promote genetic innovations. For this reason, they were suggested as an important creative force in the genome evolution and adaptation of an organism to altered environmental conditions. In this review, we summarize the up-to-date knowledge of different ways of retroelement involvement in structural and functional evolution of genes and genomes, as well as the mechanisms generated by cells to control their retrotransposition.

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Year:  2009        PMID: 19649766     DOI: 10.1007/s00018-009-0107-2

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  156 in total

1.  Identification and characterization of a transcriptional silencer upstream of the human BRCA2 gene.

Authors:  C Sharan; N M Hamilton; A K Parl; P K Singh; G Chaudhuri
Journal:  Biochem Biophys Res Commun       Date:  1999-11-19       Impact factor: 3.575

2.  Genomic scrap yard: how genomes utilize all that junk.

Authors:  W Makałowski
Journal:  Gene       Date:  2000-12-23       Impact factor: 3.688

3.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

4.  Frequent human genomic DNA transduction driven by LINE-1 retrotransposition.

Authors:  O K Pickeral; W Makałowski; M S Boguski; J D Boeke
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

5.  Alternative splicing of the human VEGFGR-3/FLT4 gene as a consequence of an integrated human endogenous retrovirus.

Authors:  D C Hughes
Journal:  J Mol Evol       Date:  2001-08       Impact factor: 2.395

Review 6.  DIRS-1 and the other tyrosine recombinase retrotransposons.

Authors:  R T M Poulter; T J D Goodwin
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

7.  Nucleotide sequence of the haptoglobin and haptoglobin-related gene pair. The haptoglobin-related gene contains a retrovirus-like element.

Authors:  N Maeda
Journal:  J Biol Chem       Date:  1985-06-10       Impact factor: 5.157

8.  Three independent insertions of retrovirus-like sequences in the haptoglobin gene cluster of primates.

Authors:  N Maeda; H S Kim
Journal:  Genomics       Date:  1990-12       Impact factor: 5.736

9.  Do LINEs have a role in X-chromosome inactivation?

Authors:  Mary F Lyon
Journal:  J Biomed Biotechnol       Date:  2006

10.  Exon creation and establishment in human genes.

Authors:  André Corvelo; Eduardo Eyras
Journal:  Genome Biol       Date:  2008       Impact factor: 13.583

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  50 in total

Review 1.  All's well that transcribes well: non-coding RNAs and post-stroke brain damage.

Authors:  Raghu Vemuganti
Journal:  Neurochem Int       Date:  2013-08-15       Impact factor: 3.921

2.  Stable coevolutionary regimes for genetic parasites and their hosts: you must differ to coevolve.

Authors:  Faina Berezovskaya; Georgy P Karev; Mikhail I Katsnelson; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2018-12-14       Impact factor: 4.540

3.  Coevolution of retroelements and tandem zinc finger genes.

Authors:  James H Thomas; Sean Schneider
Journal:  Genome Res       Date:  2011-07-22       Impact factor: 9.043

Review 4.  Physiology of the read-write genome.

Authors:  James A Shapiro
Journal:  J Physiol       Date:  2014-06-01       Impact factor: 5.182

5.  How many antiviral small interfering RNAs may be encoded by the mammalian genomes?

Authors:  Anastasia Zabolotneva; Victor Tkachev; Felix Filatov; Anton Buzdin
Journal:  Biol Direct       Date:  2010-11-08       Impact factor: 4.540

6.  LINE-1 distribution in six rodent genomes follow a species-specific pattern.

Authors:  A Vieira-da-Silva; F Adega; H Guedes-Pinto; R Chaves
Journal:  J Genet       Date:  2016-03       Impact factor: 1.166

Review 7.  Evolution of gene regulatory networks controlling body plan development.

Authors:  Isabelle S Peter; Eric H Davidson
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

8.  Altered expression of PIWI RNA in the rat brain after transient focal ischemia.

Authors:  Ashutosh Dharap; Venkata Prasuja Nakka; Raghu Vemuganti
Journal:  Stroke       Date:  2011-02-10       Impact factor: 7.914

9.  Genomic localization of AtRE1 and AtRE2, copia-type retrotransposons, in natural variants of Arabidopsis thaliana.

Authors:  Mari Yamada; Yumi Yamagishi; Masashi Akaoka; Hidetaka Ito; Atsushi Kato
Journal:  Mol Genet Genomics       Date:  2014-04-27       Impact factor: 3.291

10.  LINE- and Alu-containing genomic instability hotspot at 16q24.1 associated with recurrent and nonrecurrent CNV deletions causative for ACDMPV.

Authors:  Przemyslaw Szafranski; Ewelina Kośmider; Qian Liu; Justyna A Karolak; Lauren Currie; Sandhya Parkash; Stephen G Kahler; Elizabeth Roeder; Rebecca O Littlejohn; Thomas S DeNapoli; Felix R Shardonofsky; Cody Henderson; George Powers; Virginie Poisson; Denis Bérubé; Luc Oligny; Jacques L Michaud; Sandra Janssens; Kris De Coen; Jo Van Dorpe; Annelies Dheedene; Matthew T Harting; Matthew D Weaver; Amir M Khan; Nina Tatevian; Jennifer Wambach; Kathleen A Gibbs; Edwina Popek; Anna Gambin; Paweł Stankiewicz
Journal:  Hum Mutat       Date:  2018-08-22       Impact factor: 4.878

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