Literature DB >> 27016727

Automated eligibility screening and monitoring for genotype-driven precision oncology trials.

Michael H Eubank1, David M Hyman2, Amritha D Kanakamedala3, Stuart M Gardos3, Jonathan M Wills3, Peter D Stetson4.   

Abstract

The Information Systems Department at Memorial Sloan Kettering Cancer Center developed the DARWIN Cohort Management System (DCMS). The DCMS identifies and tracks cohorts of patients based on genotypic and clinical data. It assists researchers and treating physicians in enrolling patients to genotype-matched IRB-approved clinical trials. The DCMS sends automated, actionable, and secure email notifications to users with information about eligible or enrolled patients before their upcoming appointments. The system also captures investigators input via annotations on patient eligibility and preferences on future status updates. As of August 2015, the DCMS is tracking 159,893 patients on both clinical operations and research cohorts. 134 research cohorts have been established and track 64,473 patients. 51,192 of these have had one or more genomic tests including MSK-IMPACT, comprising the pool eligible for genotype-matched studies. This paper describes the design and evolution of this Informatics solution.
© The Author 2016. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  clinical research informatics; genomics; individualized medicine; informatics; precision oncology

Mesh:

Year:  2016        PMID: 27016727      PMCID: PMC6370254          DOI: 10.1093/jamia/ocw020

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  11 in total

Review 1.  Implementing Genome-Driven Oncology.

Authors:  David M Hyman; Barry S Taylor; José Baselga
Journal:  Cell       Date:  2017-02-09       Impact factor: 41.582

Review 2.  Basket Studies: Redefining Clinical Trials in the Era of Genome-Driven Oncology.

Authors:  Jessica J Tao; Alison M Schram; David M Hyman
Journal:  Annu Rev Med       Date:  2017-11-09       Impact factor: 13.739

Review 3.  Challenges and Obstacles in Applying Therapeutical Indications Formulated in Molecular Tumor Boards.

Authors:  Edoardo Crimini; Matteo Repetto; Paolo Tarantino; Liliana Ascione; Gabriele Antonarelli; Elena Guerini Rocco; Massimo Barberis; Luca Mazzarella; Giuseppe Curigliano
Journal:  Cancers (Basel)       Date:  2022-06-29       Impact factor: 6.575

4.  Precision medicine informatics.

Authors:  Lewis J Frey; Elmer V Bernstam; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2016-06-06       Impact factor: 7.942

Review 5.  The Future of Clinical Trial Design in Oncology.

Authors:  Anna Spreafico; Aaron R Hansen; Albiruni R Abdul Razak; Philippe L Bedard; Lillian L Siu
Journal:  Cancer Discov       Date:  2021-04       Impact factor: 38.272

6.  Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients.

Authors:  Ahmet Zehir; Ryma Benayed; Ronak H Shah; Aijazuddin Syed; Sumit Middha; Hyunjae R Kim; Preethi Srinivasan; Jianjiong Gao; Debyani Chakravarty; Sean M Devlin; Matthew D Hellmann; David A Barron; Alison M Schram; Meera Hameed; Snjezana Dogan; Dara S Ross; Jaclyn F Hechtman; Deborah F DeLair; JinJuan Yao; Diana L Mandelker; Donavan T Cheng; Raghu Chandramohan; Abhinita S Mohanty; Ryan N Ptashkin; Gowtham Jayakumaran; Meera Prasad; Mustafa H Syed; Anoop Balakrishnan Rema; Zhen Y Liu; Khedoudja Nafa; Laetitia Borsu; Justyna Sadowska; Jacklyn Casanova; Ruben Bacares; Iwona J Kiecka; Anna Razumova; Julie B Son; Lisa Stewart; Tessara Baldi; Kerry A Mullaney; Hikmat Al-Ahmadie; Efsevia Vakiani; Adam A Abeshouse; Alexander V Penson; Philip Jonsson; Niedzica Camacho; Matthew T Chang; Helen H Won; Benjamin E Gross; Ritika Kundra; Zachary J Heins; Hsiao-Wei Chen; Sarah Phillips; Hongxin Zhang; Jiaojiao Wang; Angelica Ochoa; Jonathan Wills; Michael Eubank; Stacy B Thomas; Stuart M Gardos; Dalicia N Reales; Jesse Galle; Robert Durany; Roy Cambria; Wassim Abida; Andrea Cercek; Darren R Feldman; Mrinal M Gounder; A Ari Hakimi; James J Harding; Gopa Iyer; Yelena Y Janjigian; Emmet J Jordan; Ciara M Kelly; Maeve A Lowery; Luc G T Morris; Antonio M Omuro; Nitya Raj; Pedram Razavi; Alexander N Shoushtari; Neerav Shukla; Tara E Soumerai; Anna M Varghese; Rona Yaeger; Jonathan Coleman; Bernard Bochner; Gregory J Riely; Leonard B Saltz; Howard I Scher; Paul J Sabbatini; Mark E Robson; David S Klimstra; Barry S Taylor; Jose Baselga; Nikolaus Schultz; David M Hyman; Maria E Arcila; David B Solit; Marc Ladanyi; Michael F Berger
Journal:  Nat Med       Date:  2017-05-08       Impact factor: 53.440

7.  A Curated Cancer Clinical Outcomes Database (C3OD) for accelerating patient recruitment in cancer clinical trials.

Authors:  Dinesh Pal Mudaranthakam; Jeffrey Thompson; Jinxiang Hu; Dong Pei; Shanthan Reddy Chintala; Michele Park; Brooke L Fridley; Byron Gajewski; Devin C Koestler; Matthew S Mayo
Journal:  JAMIA Open       Date:  2018-07-10

8.  Immunogenicity and therapeutic targeting of a public neoantigen derived from mutated PIK3CA.

Authors:  Smita S Chandran; Jiaqi Ma; Martin G Klatt; Friederike Dündar; Chaitanya Bandlamudi; Pedram Razavi; Hannah Y Wen; Britta Weigelt; Paul Zumbo; Si Ning Fu; Lauren B Banks; Fei Yi; Enric Vercher; Inaki Etxeberria; Watchain D Bestman; Arnaud Da Cruz Paula; Ilinca S Aricescu; Alexander Drilon; Doron Betel; David A Scheinberg; Brian M Baker; Christopher A Klebanoff
Journal:  Nat Med       Date:  2022-04-28       Impact factor: 87.241

9.  Evaluation of an artificial intelligence clinical trial matching system in Australian lung cancer patients.

Authors:  Marliese Alexander; Benjamin Solomon; David L Ball; Mimi Sheerin; Irene Dankwa-Mullan; Anita M Preininger; Gretchen Purcell Jackson; Dishan M Herath
Journal:  JAMIA Open       Date:  2020-05-01

10.  Real-World Outcomes of an Automated Physician Support System for Genome-Driven Oncology.

Authors:  Jessica J Tao; Michael H Eubank; Alison M Schram; Nicholas Cangemi; Erika Pamer; Ezra Y Rosen; Nikolaus Schultz; Debyani Chakravarty; John Philip; Jaclyn F Hechtman; James J Harding; Lillian M Smyth; Komal L Jhaveri; Alexander Drilon; Marc Ladanyi; David B Solit; Ahmet Zehir; Michael F Berger; Peter D Stetson; Stuart M Gardos; David M Hyman
Journal:  JCO Precis Oncol       Date:  2019-07-24
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