| Literature DB >> 27014587 |
Shubham Misra1, Pradeep Kumar1, Amit Kumar1, Ram Sagar1, Kamalesh Chakravarty1, Kameshwar Prasad1.
Abstract
BACKGROUND: Sequence variations in genes involved in inflammatory system are known to contribute to the risk of cerebrovascular diseases (CVD) including stroke. Very few number of studies have been published in the context of the association between Interleukin-1α(IL-1α), CD14 cell surface glycoprotein (CD14), Galectin-2-encoding gene (LGALS2)and proteasome subunit type 6 (PSMA6) gene polymorphisms with susceptibility to ischemic stroke (IS).Entities:
Keywords: Cerebral infarction; Cytokines; Inflammatory gene; Ischemic stroke; Meta-analysis; Polymorphisms
Year: 2016 PMID: 27014587 PMCID: PMC4792905 DOI: 10.1016/j.mgene.2016.01.003
Source DB: PubMed Journal: Meta Gene ISSN: 2214-5400
Scale for quality assessment.
| Criteria | Score |
|---|---|
| Selected from any population disease registry or multiple center sites | 2 |
| Selected from any cardiology/neurology | 1 |
| Not described | 0 |
| Population or neighbor based | 3 |
| Hospital based | 2 |
| Healthy volunteers with total description | 1 |
| Healthy volunteers without total description | 0.5 |
| Not described | 0 |
| Age & sex match | 2 |
| Smoking, hypertensive, diabetics | 1 |
| Not matched | 0 |
| Adequate confirmation | 2 |
| Diagnosis of IS by patient medical record | 1 |
| Not described | 0 |
| Stroke frees status by using appropriate QVSS or CT/MRI | 1 |
| Not described | 0 |
| Genotyping done under blinded conditions | 1 |
| Unblinded or not mentioned | 0 |
| DNA sequencing/multiplex PCR | 2 |
| PCR-RFLP | 1 |
| Others | 0 |
| Allelic frequency in accordance HWE | 2 |
| Not HWE but followed statistics to adjust confounding | 1 |
| Not checked | 0 |
| Appropriate statistics and examining confounders and effect modifiers | 1 |
| Inappropriate statistics used Inappropriate statistics used | 0 |
| Total score | 16 |
Fig. 1Flow diagram of the selection of studies and specific reasons for exclusion from the present meta-analysis.
Fig. 3Begg's funnel plot for assessing publication bias for (1) IL1α-C889T, (2) IL1α-C511T, (3) PSMA6- C8G, (4) LGALS2-C3279T and (5) CD14-C260T gene polymorphisms.
Characteristic of studies included in the meta-analysis of the association of TNF-α gene polymorphism with the risk of ischemic stroke.
| S. no | Author, year | Origin | Ethnicity | Sample size case(N)/ | Gene polymorphism | Variant | PCR-method | Matching criteria | M/F | Age | HWE | Source of control | Quality score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Banerjee I, 2008( | India | Asian | 112/212 | IL-1α PSMA6 | C889T 8C/G | PCR-RFLP | Age–sex and geography | 72/40 | 58.6 ± 14.2 | Yes | HB | 10 |
| 2. | Olsson S, 2012( | Sweden | Caucasian | 844/668 | IL-1α | C889T C511T | NA | Age–sex | 554/290 | 59 (51–64) | Yes | PB | 12 |
| 3. | Li N, 2010( | China | Asian | 371/371 | IL-1α | C889T C511T | PCR-RFLP | NA | 230/141 | 63.88 ± 7.36 | Yes | PB | 12 |
| 4. | Zhao J, 2012( | China | Asian | 682/598 | IL-1α | C889T | PCR-RFLP | Age–sex | 403/279 | 62.09 ± 9.43 | Yes | HB | 13 |
| 5. | Zhang Z, 2013( | China | Asian | 440/486 | IL-1α | C889T C511T | PCR-sequencing | Age–sex | 291/149 | 66.6 ± 8.4 | Yes | HB | 13 |
| 6. | Zee RYL, 2008 ( | USA | Caucasian | 258/258 | IL-1α | C511T | ABI fluorescence-based allelic discrimination | Age–smoking | Geography | 62.1 ± 0.5 | Yes | PB | 11 |
| 7. | Um JY, 2003 ( | Korea | Asian | 360/519 | IL-1α | C889T | PCR-RFLP | Age–sex | 177/183 | 61.0 ± 14.5 | Yes | HB | 10 |
| 8. | Lai J, 2006 | China | Asian | 112/95 | IL-1α | C511T | PCR-RFLP | Geography | 72/40 | 56.9 ± 13.1 | Yes | PB | 11 |
| 9. | Dziedzic T, 2005 (a) | Poland | Caucasian | 122/227 | IL-1α | C511T | PCR-RFLP | Age–sex | 66/56 | 63.2 ± 12.4 | Yes | HB | 12 |
| 10. | Dziedzic T, 2005 (b) | Poland | Caucasian | 221/219 | IL-1α | C511T | PCR-RFLP | Age–sex | 91/130 | 70.4 ± 13.1 | Yes | HB | 12 |
| 11. | Rubattu S, 2005 | Italy | Caucasian | 115/180 | IL-1α | C511T | PCR-RFLP | Age | 51/64 | 35.95 ± 8.12 | Yes | PB | 12 |
| 12. | Lacoviello L, 2005 | Italy | Caucasian | 134/134 | IL-1α | C511T | DNA sequencing | Age–sex | 69/65 | 35 ± 7 | Yes | PB | 15 |
| 13. | Seripa D, 2003 | Italy | Caucasian | 101/110 | IL-1α | C511T | PCR-RFLP | Age | 51/50 60/50 | 65.8 ± 10.4 | Yes | PB | 12 |
| 14. | Freilinger T, 2009 ( | Germany | Caucasian | 601/736 | PSMA6 LGALS2 | 8C/G C3279T | MALDI-TOF mass spectrometry | Age–sex | 377/− | 64/− | Yes | HB | 10 |
| 15. | Szolnoki Z, 2009 ( | Hungary | Caucasian | 385/303 | LGALS2 | C3279T | PCR-RFLP | NA | 222/163 | 67.4 ± 13.65 | Yes | HB | 9 |
| 16. | Lin TM, 2008 ( | Taiwan | Asian | 450/450 | CD14 | C260T | PCR-RFLP | Age–sex | 248/202 | 64.2 ± 12.7 | No | PB | 10 |
| 17. | Lichy C, 2002 ( | Germany | Caucasian | 151/149 | CD14 | C260T | PCR-RFLP | Age-sex | 107/44 109/40 | 59.7 ± 10.8 | No | PB | 10 |
| 18. | Zee RYL, 2002( | USA | Caucasian | 338/338 | CD14 | C260T | PCR-FRLP | Age–smoking | NA | 61.0 ± 8.3 | Yes | HB | 11 |
| 19. | Ito D, 2000 ( | Japan | Asian | 235/309 | CD14 | C260T | PCR-RFLP | Age–sex | 183/52 | 58.3 ± 7.8 | No | HB | 9 |
| 20. | Kis Z, 2007 ( | Hungary | Caucasian | 59/52 | CD14 | C260T | Nested PCR | NA | 38/21 | 52.8 | No | HB | 8 |
| 21. | Park MH, 2006 | Korea | Asian | 125/125 | CD14 | C260T | PCR-RFLP | Age–sex | 63/62 | 66.74 ± 7.69 | Yes | HB | 13 |
Abbreviations: PCR — polymerase chain reaction; RFLP — restriction fragment length polymorphism; M — male; F — female; NA — not available; PB — population based; HB — hospital based; MALDI-TOF — matrix assisted laser desorption ionization-time of flight; and HWE — Hardy Weinberg equilibrium.
Fig. 2Forest plot for the association between (1) IL1α-C889T, (2) IL1α-C511T, (3) PSMA6-C8G, (4) LGALS2-C3279T and (5) CD14-C260T gene polymorphisms and IS risk under (A) dominant model, (B) recessive model.