Literature DB >> 27007908

Unraveling the evolutionary scenario of the hobo element in populations of Drosophila melanogaster and D. simulans in South America using the TPE repeats as markers.

Geovani T Ragagnin1, Larissa P Bernardo1, Elgion L S Loreto2.   

Abstract

Transposable elements (TEs) are nucleotide sequences found in most studied genomes. These elements are highly diversified and have a large variation in nucleotide structure and mechanisms of transposition. hobo is a member of class II, belonging to hAT superfamily, described inDrosophila melanogaster, and it presents in its Open Reading Frame, a repetitive region encoding the amino acids threonine-proline-glutamic acid (TPE), which shows variability in the number of repeats in some regions of the world. Due to this variability some evolutionary scenarios of the hobo element are discussed, such as the scenario of the invasion of hobo element in populations ofD. melanogaster. In the present study, we investigated 22 DNA sequences of D. melanogaster and seven sequences ofD. simulans, both from South America, to check the number of repetitions of TPE, in order to clarify the evolutionary scenario of thehobo element in these populations. Our results showed a monomorphism in populations of both species in South America, with only three TPE repeats. Hence, we discuss and propose an evolutionary scenario of the invasion of the hobo element in populations of D. melanogaster and D. simulans.

Entities:  

Year:  2016        PMID: 27007908      PMCID: PMC4807377          DOI: 10.1590/1678-4685-GMB-2015-0049

Source DB:  PubMed          Journal:  Genet Mol Biol        ISSN: 1415-4757            Impact factor:   1.771


  26 in total

Review 1.  A unified classification system for eukaryotic transposable elements.

Authors:  Thomas Wicker; François Sabot; Aurélie Hua-Van; Jeffrey L Bennetzen; Pierre Capy; Boulos Chalhoub; Andrew Flavell; Philippe Leroy; Michele Morgante; Olivier Panaud; Etienne Paux; Phillip SanMiguel; Alan H Schulman
Journal:  Nat Rev Genet       Date:  2007-12       Impact factor: 53.242

Review 2.  Eukaryotic transposable elements and genome evolution.

Authors:  D J Finnegan
Journal:  Trends Genet       Date:  1989-04       Impact factor: 11.639

3.  A scenario for the hobo transposable element invasion, deduced from the structure of natural populations of Drosophila melanogaster using tandem TPE repeats.

Authors:  E Bonnivard; C Bazin; B Denis; D Higuet
Journal:  Genet Res       Date:  2000-02       Impact factor: 1.588

4.  Sequences homologous to the hobo transposable element in E strains of Drosophila melanogaster.

Authors:  M I Galindo; Y Bigot; M D Sánchez; G Periquet; L Pascual
Journal:  Mol Biol Evol       Date:  2001-08       Impact factor: 16.240

5.  Mobilization of a hobo-related sequence in the genome of Drosophila simulans.

Authors:  F P Torres; L F M Fonte; V L S Valente; E L S Loreto
Journal:  Genetica       Date:  2006-01       Impact factor: 1.082

Review 6.  The strange phylogenies of transposable elements: are horizontal transfers the only explantation?

Authors:  P Capy; D Anxolabéhère; T Langin
Journal:  Trends Genet       Date:  1994-01       Impact factor: 11.639

7.  Distribution of hobo transposable elements in natural populations of Drosophila melanogaster.

Authors:  L Pascual; G Periquet
Journal:  Mol Biol Evol       Date:  1991-05       Impact factor: 16.240

8.  Evidence for a common evolutionary origin of inverted repeat transposons in Drosophila and plants: hobo, Activator, and Tam3.

Authors:  B R Calvi; T J Hong; S D Findley; W M Gelbart
Journal:  Cell       Date:  1991-08-09       Impact factor: 41.582

9.  hobo transposable elements in Drosophila melanogaster and D. simulans.

Authors:  I A Boussy; S B Daniels
Journal:  Genet Res       Date:  1991-08       Impact factor: 1.588

10.  High mutation rate of TPE repeats: a microsatellite in the putative transposase of the hobo element in Drosophila melanogaster.

Authors:  Sémi Souames; Eric Bonnivard; Claude Bazin; Dominique Higuet
Journal:  Mol Biol Evol       Date:  2003-07-28       Impact factor: 16.240

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  2 in total

1.  LoRTE: Detecting transposon-induced genomic variants using low coverage PacBio long read sequences.

Authors:  Eric Disdero; Jonathan Filée
Journal:  Mob DNA       Date:  2017-04-08

Review 2.  Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation.

Authors:  Justin P Blumenstiel
Journal:  Genes (Basel)       Date:  2019-05-03       Impact factor: 4.096

  2 in total

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