Literature DB >> 27006813

Crystal structures of three anhydrous salts of the Lewis base 1,8-di-aza-bicyclo-[5.4.0]undec-7-ene (DBU) with the ring-substituted benzoic acid analogues 4-amino-benzoic acid, 3,5-di-nitro-benzoic acid and 3,5-di-nitro-salicylic acid.

Graham Smith1, Daniel E Lynch2.   

Abstract

The anhydrous salts of the Lewis base 1,8-di-aza-bicyclo-[5.4.0]undec-7-ene (DBU) with 4-amino-benzoic acid [1-aza-8-azoniabi-cyclo-[5.4.0]undec-7-ene 4-amino-benzoate, C9H17N2 (+)·C7H6NO2 (-) (I)], 3,5-di-nitro-benzoic acid [1-aza-8-azoniabi-cyclo-[5.4.0]undec-7-ene 3,5-di-nitro-benzoate, C9H17N2 (+)·C7H3N2O6 (-), (II)] and 3,5-di-nitro-salicylic acid (DNSA) [1-aza-8-azoniabi-cyclo-[5.4.0]undec-7-ene 2-hy-droxy-3,5-di-nitro-benzoate, C9H17N2 (+)·C7H3N2O7 (-), (III)] have been determined and their hydrogen-bonded structures are described. In both (II) and (III), the DBU cations have a common disorder in three of the C atoms of the six-membered ring moieties [site-occupancy factors (SOF) = 0.735 (3)/0.265 (3) and 0.686 (4)/0.314 (4), respectively], while in (III), there is additional rotational disorder in the DNSA anion, giving two sites (SOF = 0.72/0.28, values fixed) for the phenol group. In the crystals of (I) and (III), the cation-anion pairs are linked through a primary N-H⋯Ocarbox-yl hydrogen bond [2.665 (2) and 2.869 (3) Å, respectively]. In (II), the ion pairs are linked through an asymmetric three-centre R 1 (2)(4), N-H⋯O,O' chelate association. In (I), structure extension is through amine N-H⋯Ocarbox-yl hydrogen bonds between the PABA anions, giving a three-dimensional structure. The crystal structures of (II) and (III) are very similar, the cation-anion pairs being associated only through weak C-H⋯O hydrogen bonds, giving in both overall two-dimensional layered structures lying parallel to (001). No π-π ring associations are present in any of the structures.

Entities:  

Keywords:  1,8-di­aza­bicyclo­[5.4.0]undec-7-ene; BDU; benzoate salts; crystal structure; hydrogen bonding

Year:  2016        PMID: 27006813      PMCID: PMC4778835          DOI: 10.1107/S205698901600267X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context and database survey

The Lewis base 1,8-di­aza­bicyclo­[5.4.0]undec-7-ene (DBU) is an alkaloid isolated from the sponge Niphates digitalis (Regalado et al., 2010 ▸) but is commonly synthesized. It finds use as a curing agent for ep­oxy resins, as a catalyst in organic syntheses, and as a counter-cation in metal complex chemistry, e.g. with the penta­bromo­(tri­phenyl­phosphane)platinum(IV) monoanion (Motevalli et al., 1989 ▸). It has also found use in binding organic liquids (BOLs), which usually comprise a mixture of amidines or guanidine and alcohol, and are used to reversibly capture and release gases such as CO2, CS2, SO2 or COS (Shannon et al., 2015 ▸; Pérez et al., 2004 ▸; Heldebrant et al., 2009 ▸). The structure of one of these formed from the absorption of CO2 is the bicarbonate (Pérez et al., 2004 ▸). As a very strong base (pK a ca 14), protonation of the N8 group of the six-membered hetero-ring of DBU is readily achieved and results in the formation of salts with carb­oxy­lic acids and phenols. The Cambridge Structural Database (2015 version) (Groom & Allen, 2014 ▸) contains 35 examples of organic salts of DBU, among them the benzyl di­thio­carbonate (Heldebrant et al., 2009 ▸) and the phenolate from 2,6-di(tert-but­yl)-4-nitro­phenol (Lynch & McClenaghan, 2003 ▸). However, of the total there are surprisingly few carboxyl­ate salts, e.g. with Kemp’s triacid (1,3,5-tri­methyl­cyclo­hexane-1,3,5-tri­carb­oxy­lic acid) (a monoanionic aceto­nitrile salt) (Huczyński et al., 2008 ▸) and the dianionic salt of the tetra­(3-carb­oxy­phen­yl)-substituted porphyrin (Lipstman & Goldberg, 2013 ▸). No reported crystal structures of salts with simple substituted benzoic acids are found, so in order to examine the hydrogen-bonding in crystals of the DBU salts with some common ring-substituted benzoic acids, a number of these were prepared. Suitable crystals were obtained with 4-amino­benzoic acid (PABA), (3,5-di­nitro­benzoic acid (DNBA) and (3,5-di­nitro­salicylic acid (DNSA), giving the anhydrous salts, C9H17N2 + C7H6NO2 − (I), C9H17N2 + C7H3N2O6 − (II) and C9H17N2 + C7H3N2O7 − (III), respectively and their structures and hydrogen-bonding modes are reported herein.

Structural commentary

The asymmetric units of (I)–(III) comprise a BDU cation (A) and a 4-amino­benzoate anion (B), (I) (Fig. 1 ▸), a 3,5-di­nitro­benzoate anion (B), (II) (Fig. 2 ▸), and a 3,5-di­nitro­salicylate anion (B), (III) (Fig. 3 ▸). The cation–anion pairs in (I) and (III) are linked through a primary N8A—H⋯Ocarbox­yl hydrogen bond [2.665 (2) and 2.871 (3) Å, respectively; Tables 1 ▸ and 3 ▸]. In (II), the ion pairs are linked through an asymmetric three-centre (4), N8A—H⋯O,O′ chelate association [2.777 (2), 3.117 (2) Å; Table 2 ▸]. With (III), the corresponding longer contact with the second carboxyl O12B atom is 3.222 (3) Å (Fig. 3 ▸).
Figure 1

The atom-numbering scheme and the mol­ecular conformation of the DBU cation (A) and the PABA anion (B) in (I) with displacement ellipsoids drawn at the 40% probability level. The cation–anion hydrogen bond is shown as a dashed line.

Figure 2

The atom-numbering scheme and the mol­ecular conformation of the DBU cation (A) and the DNBA anion (B) in (II) with displacement ellipsoids drawn at the 40% probability level. The bonds in the minor disordered section of the six-membered ring of the cation and the cation–anion hydrogen bonds are shown as dashed lines.

Figure 3

The atom-numbering scheme and the mol­ecular conformation of the DBU cation (A) and the DNSA anion (B) in (III) with displacement ellipsoids drawn at the 40% probability level. The bonds in the minor disordered section of the six-membered ring of the cation are shown as dashed lines.

Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N8A—H8A⋯O11B 0.89 (2)1.78 (2)2.665 (2)170 (2)
N4B—H41B⋯O11B i 0.89 (2)2.05 (2)2.939 (2)176 (2)
N4B—H42B⋯O12B ii 0.92 (2)1.98 (2)2.891 (2)176 (2)

Symmetry codes: (i) ; (ii) .

Table 3

Hydrogen-bond geometry (Å, °) for (III)

D—H⋯A D—HH⋯A DA D—H⋯A
N8A—H8A⋯O11B 0.88 (2)1.99 (2)2.871 (3)176 (2)
O2B—H2B⋯O12B 0.841.722.473 (3)149
C10A—H11A⋯O32B i 0.992.453.251 (5)138
C2A—H21A⋯O31B ii 0.992.483.281 (3)138

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °) for (II)

D—H⋯A D—HH⋯A DA D—H⋯A
N8A—H8A⋯O11B 0.90 (2)1.88 (2)2.777 (2)177 (2)
N8A—H8A⋯O12B 0.90 (2)2.53 (2)3.117 (2)124 (1)
C10A—H11A⋯O32B i 0.992.443.247 (3)138
C2A—H21A⋯O31B ii 0.992.563.309 (2)133
C6A—H62A⋯O11B 0.992.603.438 (2)143

Symmetry codes: (i) ; (ii) .

With the structures of (II) and (III), there is disorder in the six-membered ring system involving atoms C9A and C10A (with alternative minor occupancy sites C12A and C13A), giving similar site occupancy factors [SOF 0.735 (3)/0.265 (3) and 0.686 (4)/0.314 (4) for (II) and (III), respectively]. This feature is found in three other structures among the CSD set: the previously mentioned 2,6-di(tert-but­yl)-4-nitro­phenolate (SOF 0.60/0.40) (Lynch & McClenaghan, 2003 ▸); in the 8-bromo­guanosine 8-bromo­guanoside adduct salt (SOF = 0.63/0.37) (Saftić et al., 2012 ▸) and in the counter-cation of a bromo­carbyne Mo complex (SOF = 0.83/0.17) (Cordiner et al., 2008 ▸). With the PABA anion in (I), the carboxyl­ate group is essentially coplanar with the benzene ring [torsion angle C2B—C1B—C11B— O11B = 179.25 (15)°, a feature similar to those found in the parent acid (Gracin & Fischer, 2005 ▸) and its co-crystals, e.g. with 4-nitro­benzoic acid (Bowers et al., 2005 ▸). The carboxyl­ate groups of the DNBA and DNSA anions in both (II) and (III) are also essentially coplanar with the benzene rings: torsion angles C2B—C1B—C11B—O11B = −176.60 (16) and −179.4 (2)°, respectively. The 5- and 3-substituted nitro groups are also either in-plane or out-of-plane [torsion angles C4B—C5B—N5B— O52B = 179.61 (16)° in (II) and −177.5 (2)° in (III) and C2B—C3B—N3B—O32B = −166.31 (17)° in (II) and −155.2 (2)° in (III)]. Also, in (III), the phenolic substituent group (O2B) is disordered by rotation about the C1B⋯C4B ring vector giving a minor site-occupancy factor for the O21B—H21B group of 0.28 (SOF fixed in the final refinement cycles). This is similar to the disorder in three examples among the DNSA proton-transfer salts with Lewis bases, e.g. with nicotinamide (SOF = 0.76/0.24) (Koman et al., 2003 ▸), with 2,6-di­amino­pyridine (0.90/0.10) (Smith et al., 2003 ▸) and with quinoline-2-carb­oxy­lic acid (0.51/0.49) (Smith et al., 2007 ▸). In (III), the usual short intra­molecular phenol O—H⋯Ocarbox­yl hydrogen bond is present (Table 3 ▸).

Supra­molecular features

In the crystal of (I), the N8A—H⋯O11B hydrogen-bonded cation–anion pairs are extended through inter­molecular N4B—H⋯ O11B i and ⋯N12B ii hydrogen-bonding extensions (Table 1 ▸), giving an overall three-dimensional network structure (Fig. 4 ▸). The structure contains no inter-ring π–π inter­actions or C—H⋯O hydrogen bonds.
Figure 4

The three-dimensional hydrogen-bonded framework structure of (I) viewed approximately along a. For symmetry codes, see Table 1 ▸.

The unit-cell parameters, space group (Table 4 ▸), and the overall crystal packing of (II) and (III) are very similar (Figs. 5 ▸ and 6 ▸). Although no classical hydrogen-bonding inter­actions are present between the primary cation–anion pairs, with both structures there are two minor cation C—H⋯O hydrogen-bonding extensions to nitro O-atom acceptors, C2A—H⋯O31B ii [3.309 (2) Å in (II) and 3.281 (3) Å in (III)] and C10A—H⋯O32B i [3.247 (3) Å in (II) and 3.251 (5) Å in (III)] (Tables 2 ▸ and 3 ▸). These give two-dimensional layered structures lying parallel to (001). There are no inter-ring π–π inter­actions in either (II) or (III).
Table 4

Experimental details

 (I)(II)(III)
Crystal data
Chemical formulaC9H17N2 +·C7H6NO2 C9H17N2 +·C7H3N2O6 C9H17N2 +·C7H3N2O7
M r 289.37364.36380.36
Crystal system, space groupOrthorhombic, P212121 Monoclinic, P21/n Monoclinic, P21/n
Temperature (K)200200200
a, b, c (Å)8.0986 (4), 12.9213 (6), 13.7344 (7)6.0197 (4), 19.6228 (13), 14.3866 (8)6.1537 (3), 19.1541 (14), 14.5527 (11)
α, β, γ (°)90, 90, 9090, 98.078 (5), 9090, 98.343 (6), 90
V3)1437.23 (12)1682.53 (18)1697.2 (2)
Z 444
Radiation typeMo KαMo KαMo Kα
μ (mm−1)0.090.110.12
Crystal size (mm)0.40 × 0.26 × 0.240.30 × 0.13 × 0.080.30 × 0.13 × 0.10
 
Data collection
DiffractometerOxford Diffraction Gemini-S CCD-detectorOxford Diffraction Gemini-S CCD-detectorOxford Diffraction Gemini-S CCD-detector
Absorption correctionMulti-scan (CrysAlis PRO; Agilent, 2014)Multi-scan (CrysAlis PRO; Agilent, 2014)Multi-scan (CrysAlis PRO; Agilent, 2014)
T min, T max 0.93, 0.990.90, 0.990.920, 0.990
No. of measured, independent and observed [I > 2σ(I)] reflections7372, 3324, 28477082, 3311, 25617800, 3339, 2347
R int 0.0310.0240.034
(sin θ/λ)max−1)0.6870.6170.617
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.044, 0.098, 1.070.045, 0.109, 1.020.058, 0.123, 1.03
No. of reflections332433113339
No. of parameters199245263
No. of restraints333
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.20, −0.250.18, −0.220.29, −0.29

Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SIR92 (Altomare et al., 1993 ▸), SHELXL97 (Sheldrick, 2008 ▸) within WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).

Figure 5

The packing of the hydrogen-bonded cation-anion pairs in the unit cell of (II), viewed along a. The minor-component disordered atoms and the non-associative H atoms have been omitted.

Figure 6

The packing of the hydrogen-bonded cation-anion pairs in the unit cell of (III), viewed along a. The minor-component disordered atoms and the non-associative H atoms have been omitted.

Synthesis and crystallization

The title compounds (I)–(III) were prepared by first dissolving 100 mg of either PABA, DNBA, or DNSA in 5 mL of warm ethanol followed by the addition, with stirring, of 111 mg (I), 72 mg (II) or 67 mg (III) of BDU, respectively. Slow evaporation at room temperature gave colourless needles of (I), colourless prisms of (II), and fine yellow needles of (III), from which specimens were cleaved for the X-ray analyses.

Refinement details

Crystal data, data collection and structure refinement details are given in Table 4 ▸. Hydrogen atoms were placed in calculated positions [C—Haromatic = 0.95 Å or C—Hmethyl­ene = 0.99 Å] and were allowed to ride in the refinements, with U iso(H) = 1.2U eq(C). The amine and aminium H-atoms were located in difference-Fourier analyses and were allowed to refine with distance restraints [N—H = 0.90 (2) Å] and with U iso(H) = 1.2U eq(N). Disorder involving atoms C9A and C10A of the six-membered ring systems of both (II) and (III) gave refined minor occupancy sites C12A and C13A, with site occupancy factors of 0.735 (3)/0.265 (3) and 0.686 (4)/0.314 (4), respectively. Also in (III), the phenol group of the DNSA anion was found to be disordered with the minor occupancy site (O21B) having a SOF = 0.28, which was fixed in the final cycles of refinement. In the structure of (I), although of no relevance in the achiral mol­ecule, the Flack parameter (Flack, 1983 ▸) was determined as −0.1 (13) for 1668 Friedel pairs, which serves to indicate the lack of any usable anomalous scattering signal, as expected for an all-light-atom structure determined with Mo Kα X-rays. Crystal structure: contains datablock(s) global, I, II, III. DOI: 10.1107/S205698901600267X/pk2574sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901600267X/pk2574Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S205698901600267X/pk2574IIsup3.hkl Structure factors: contains datablock(s) III. DOI: 10.1107/S205698901600267X/pk2574IIIsup4.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901600267X/pk2574Isup5.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901600267X/pk2574IIsup6.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901600267X/pk2574IIIsup7.cml CCDC references: 1453494, 1453493, 1453492 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H17N2+·C7H6NO2F(000) = 624
Mr = 289.37Dx = 1.337 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2097 reflections
a = 8.0986 (4) Åθ = 3.5–28.4°
b = 12.9213 (6) ŵ = 0.09 mm1
c = 13.7344 (7) ÅT = 200 K
V = 1437.23 (12) Å3Prism, colourless
Z = 40.40 × 0.26 × 0.24 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer3324 independent reflections
Radiation source: Enhance (Mo) X-ray source2847 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
Detector resolution: 16.067 pixels mm-1θmax = 29.2°, θmin = 3.3°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −16→15
Tmin = 0.93, Tmax = 0.99l = −17→18
7372 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0438P)2 + 0.0476P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3324 reflectionsΔρmax = 0.20 e Å3
199 parametersΔρmin = −0.25 e Å3
3 restraintsAbsolute structure: Flack (1983), 1668 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.1 (13)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1A0.32105 (18)0.84571 (11)0.67893 (11)0.0229 (4)
N8A0.36282 (18)0.67732 (12)0.62864 (11)0.0241 (5)
C2A0.2390 (2)0.94651 (14)0.66676 (13)0.0256 (5)
C3A0.3174 (2)1.01454 (14)0.58999 (14)0.0291 (6)
C4A0.2728 (2)0.98456 (14)0.48576 (14)0.0288 (6)
C5A0.3145 (2)0.87339 (14)0.45932 (13)0.0271 (5)
C6A0.2207 (2)0.79201 (14)0.51882 (13)0.0262 (5)
C7A0.3028 (2)0.77086 (13)0.61456 (13)0.0209 (5)
C9A0.4591 (2)0.64922 (14)0.71447 (13)0.0262 (5)
C10A0.5429 (2)0.74497 (13)0.75333 (13)0.0280 (6)
C11A0.4170 (2)0.82988 (15)0.76868 (13)0.0302 (6)
O11B0.28719 (17)0.51621 (9)0.51597 (9)0.0320 (4)
O12B0.29529 (19)0.56473 (11)0.36120 (11)0.0428 (5)
N4B0.6170 (2)0.11141 (13)0.33808 (12)0.0296 (5)
C1B0.3958 (2)0.39741 (13)0.40190 (12)0.0206 (5)
C2B0.43611 (19)0.36990 (13)0.30648 (12)0.0212 (5)
C3B0.5089 (2)0.27615 (13)0.28504 (12)0.0220 (5)
C4B0.5475 (2)0.20495 (13)0.35867 (13)0.0220 (5)
C5B0.5100 (2)0.23325 (13)0.45489 (12)0.0243 (5)
C6B0.4347 (2)0.32664 (13)0.47496 (13)0.0227 (5)
C11B0.3204 (2)0.50006 (14)0.42672 (14)0.0238 (5)
H8A0.342 (2)0.6279 (14)0.5850 (13)0.0290*
H10A0.598100.728800.815800.0340*
H11A0.341800.810700.822600.0360*
H12A0.473900.894900.786700.0360*
H13A0.628100.768600.706600.0340*
H21A0.240800.983600.729800.0310*
H22A0.122000.934600.649200.0310*
H31A0.438901.011400.597400.0350*
H32A0.282901.087000.601400.0350*
H41A0.152900.995400.476200.0350*
H42A0.331701.031400.440500.0350*
H51A0.434500.862600.468700.0320*
H52A0.290000.862600.389400.0320*
H61A0.106600.816600.530600.0310*
H62A0.214100.726900.481000.0310*
H91A0.542800.596600.697000.0310*
H92A0.385700.619500.764900.0310*
H2B0.412900.416900.255100.0250*
H3B0.533200.259500.219200.0260*
H5B0.536800.187600.506700.0290*
H6B0.408700.343200.540600.0270*
H41B0.666 (2)0.0742 (16)0.3845 (13)0.0360*
H42B0.647 (2)0.0939 (16)0.2759 (12)0.0360*
U11U22U33U12U13U23
N1A0.0263 (7)0.0220 (8)0.0205 (7)0.0030 (6)−0.0033 (6)−0.0022 (6)
N8A0.0294 (8)0.0197 (8)0.0233 (8)−0.0004 (6)−0.0008 (6)−0.0024 (7)
C2A0.0276 (9)0.0223 (9)0.0269 (10)0.0053 (7)−0.0018 (7)−0.0053 (8)
C3A0.0311 (10)0.0218 (9)0.0343 (11)−0.0005 (8)−0.0031 (8)−0.0024 (8)
C4A0.0314 (10)0.0263 (9)0.0287 (10)0.0011 (8)−0.0008 (8)0.0041 (8)
C5A0.0295 (9)0.0292 (10)0.0225 (9)0.0039 (8)−0.0010 (7)−0.0007 (8)
C6A0.0312 (9)0.0221 (9)0.0253 (9)−0.0010 (7)−0.0062 (8)−0.0035 (8)
C7A0.0202 (8)0.0203 (9)0.0223 (9)−0.0013 (7)0.0013 (7)−0.0012 (7)
C9A0.0268 (9)0.0251 (9)0.0267 (10)0.0030 (8)−0.0003 (7)0.0033 (8)
C10A0.0269 (9)0.0301 (10)0.0269 (10)0.0034 (8)−0.0065 (8)−0.0010 (8)
C11A0.0365 (11)0.0306 (10)0.0235 (9)0.0053 (8)−0.0094 (8)−0.0056 (8)
O11B0.0520 (8)0.0207 (7)0.0233 (7)−0.0025 (6)0.0074 (6)−0.0035 (5)
O12B0.0643 (9)0.0337 (8)0.0305 (8)0.0187 (7)0.0123 (7)0.0099 (7)
N4B0.0406 (9)0.0260 (9)0.0223 (9)0.0072 (7)0.0000 (7)−0.0008 (7)
C1B0.0194 (8)0.0215 (9)0.0209 (9)−0.0045 (6)−0.0004 (7)0.0005 (7)
C2B0.0225 (9)0.0237 (9)0.0174 (8)−0.0015 (7)−0.0013 (6)0.0033 (7)
C3B0.0240 (8)0.0241 (8)0.0179 (8)−0.0032 (7)0.0001 (7)0.0010 (7)
C4B0.0216 (8)0.0195 (9)0.0250 (9)−0.0025 (7)−0.0011 (7)−0.0019 (7)
C5B0.0322 (9)0.0221 (9)0.0185 (8)0.0004 (8)−0.0011 (7)0.0046 (7)
C6B0.0288 (9)0.0228 (9)0.0166 (8)−0.0043 (7)0.0018 (7)−0.0017 (7)
C11B0.0255 (9)0.0221 (9)0.0237 (9)−0.0043 (7)0.0028 (7)0.0001 (7)
O11B—C11B1.272 (2)C4A—H41A0.9900
O12B—C11B1.245 (2)C5A—H52A0.9900
N1A—C11A1.471 (2)C5A—H51A0.9900
N1A—C7A1.319 (2)C6A—H61A0.9900
N1A—C2A1.472 (2)C6A—H62A0.9900
N8A—C7A1.317 (2)C9A—H91A0.9900
N8A—C9A1.459 (2)C9A—H92A0.9900
N8A—H8A0.892 (18)C10A—H10A0.9900
N4B—C4B1.363 (2)C10A—H13A0.9900
N4B—H41B0.892 (18)C11A—H12A0.9900
N4B—H42B0.916 (17)C11A—H11A0.9900
C2A—C3A1.513 (3)C1B—C11B1.499 (2)
C3A—C4A1.526 (3)C1B—C2B1.397 (2)
C4A—C5A1.520 (3)C1B—C6B1.394 (2)
C5A—C6A1.533 (2)C2B—C3B1.379 (2)
C6A—C7A1.499 (2)C3B—C4B1.402 (2)
C9A—C10A1.509 (2)C4B—C5B1.404 (2)
C10A—C11A1.513 (2)C5B—C6B1.380 (2)
C2A—H21A0.9900C2B—H2B0.9500
C2A—H22A0.9900C3B—H3B0.9500
C3A—H31A0.9900C5B—H5B0.9500
C3A—H32A0.9900C6B—H6B0.9500
C4A—H42A0.9900
C2A—N1A—C7A121.49 (15)C5A—C6A—H62A109.00
C2A—N1A—C11A117.17 (14)H61A—C6A—H62A108.00
C7A—N1A—C11A121.26 (15)C7A—C6A—H62A109.00
C7A—N8A—C9A122.97 (15)C7A—C6A—H61A109.00
C7A—N8A—H8A119.3 (11)C10A—C9A—H91A110.00
C9A—N8A—H8A117.8 (12)N8A—C9A—H92A110.00
C4B—N4B—H41B120.9 (13)N8A—C9A—H91A110.00
H41B—N4B—H42B114.5 (17)C10A—C9A—H92A110.00
C4B—N4B—H42B121.5 (13)H91A—C9A—H92A108.00
N1A—C2A—C3A113.83 (14)C9A—C10A—H10A110.00
C2A—C3A—C4A114.02 (15)H10A—C10A—H13A108.00
C3A—C4A—C5A114.29 (15)C9A—C10A—H13A110.00
C4A—C5A—C6A114.26 (14)C11A—C10A—H10A110.00
C5A—C6A—C7A111.90 (14)C11A—C10A—H13A110.00
N8A—C7A—C6A117.38 (15)N1A—C11A—H11A110.00
N1A—C7A—N8A122.23 (16)N1A—C11A—H12A110.00
N1A—C7A—C6A120.28 (15)C10A—C11A—H11A110.00
N8A—C9A—C10A108.79 (14)H11A—C11A—H12A108.00
C9A—C10A—C11A109.93 (14)C10A—C11A—H12A110.00
N1A—C11A—C10A109.88 (14)C6B—C1B—C11B120.58 (15)
C3A—C2A—H22A109.00C2B—C1B—C11B122.25 (15)
H21A—C2A—H22A108.00C2B—C1B—C6B117.12 (15)
N1A—C2A—H22A109.00C1B—C2B—C3B121.59 (15)
C3A—C2A—H21A109.00C2B—C3B—C4B121.17 (15)
N1A—C2A—H21A109.00N4B—C4B—C3B121.61 (16)
C2A—C3A—H31A109.00N4B—C4B—C5B121.03 (16)
C2A—C3A—H32A109.00C3B—C4B—C5B117.36 (15)
H31A—C3A—H32A108.00C4B—C5B—C6B120.75 (16)
C4A—C3A—H31A109.00C1B—C6B—C5B122.00 (16)
C4A—C3A—H32A109.00O11B—C11B—O12B123.50 (17)
C3A—C4A—H42A109.00O11B—C11B—C1B116.76 (16)
H41A—C4A—H42A108.00O12B—C11B—C1B119.74 (17)
C5A—C4A—H41A109.00C1B—C2B—H2B119.00
C5A—C4A—H42A109.00C3B—C2B—H2B119.00
C3A—C4A—H41A109.00C2B—C3B—H3B119.00
C6A—C5A—H52A109.00C4B—C3B—H3B119.00
H51A—C5A—H52A108.00C4B—C5B—H5B120.00
C4A—C5A—H52A109.00C6B—C5B—H5B120.00
C6A—C5A—H51A109.00C1B—C6B—H6B119.00
C4A—C5A—H51A109.00C5B—C6B—H6B119.00
C5A—C6A—H61A109.00
C7A—N1A—C2A—C3A−74.8 (2)N8A—C9A—C10A—C11A52.82 (18)
C11A—N1A—C2A—C3A108.53 (17)C9A—C10A—C11A—N1A−52.69 (19)
C2A—N1A—C7A—N8A−173.67 (15)C6B—C1B—C2B—C3B1.0 (2)
C2A—N1A—C7A—C6A10.2 (2)C11B—C1B—C2B—C3B178.48 (15)
C11A—N1A—C7A—N8A2.9 (3)C2B—C1B—C6B—C5B0.1 (2)
C11A—N1A—C7A—C6A−173.23 (15)C11B—C1B—C6B—C5B−177.44 (15)
C2A—N1A—C11A—C10A−157.91 (14)C2B—C1B—C11B—O11B179.25 (15)
C7A—N1A—C11A—C10A25.4 (2)C2B—C1B—C11B—O12B−1.6 (3)
C9A—N8A—C7A—N1A−2.2 (3)C6B—C1B—C11B—O11B−3.4 (2)
C9A—N8A—C7A—C6A174.06 (15)C6B—C1B—C11B—O12B175.83 (16)
C7A—N8A—C9A—C10A−26.7 (2)C1B—C2B—C3B—C4B−0.9 (2)
N1A—C2A—C3A—C4A77.87 (18)C2B—C3B—C4B—N4B178.92 (16)
C2A—C3A—C4A—C5A−56.71 (19)C2B—C3B—C4B—C5B−0.4 (2)
C3A—C4A—C5A—C6A62.97 (19)N4B—C4B—C5B—C6B−177.86 (16)
C4A—C5A—C6A—C7A−83.76 (18)C3B—C4B—C5B—C6B1.4 (2)
C5A—C6A—C7A—N1A60.9 (2)C4B—C5B—C6B—C1B−1.3 (3)
C5A—C6A—C7A—N8A−115.39 (17)
D—H···AD—HH···AD···AD—H···A
N8A—H8A···O11B0.89 (2)1.78 (2)2.665 (2)170 (2)
N4B—H41B···O11Bi0.89 (2)2.05 (2)2.939 (2)176 (2)
N4B—H42B···O12Bii0.92 (2)1.98 (2)2.891 (2)176 (2)
C9H17N2+·C7H3N2O6F(000) = 768
Mr = 364.36Dx = 1.438 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1784 reflections
a = 6.0197 (4) Åθ = 4.0–28.0°
b = 19.6228 (13) ŵ = 0.11 mm1
c = 14.3866 (8) ÅT = 200 K
β = 98.078 (5)°Needle, colourless
V = 1682.53 (18) Å30.30 × 0.13 × 0.08 mm
Z = 4
Oxford Diffraction Gemini-S CCD-detector diffractometer3311 independent reflections
Radiation source: fine-focus sealed tube2561 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −14→24
Tmin = 0.90, Tmax = 0.99l = −9→17
7082 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0435P)2 + 0.5615P] where P = (Fo2 + 2Fc2)/3
3311 reflections(Δ/σ)max < 0.001
245 parametersΔρmax = 0.18 e Å3
3 restraintsΔρmin = −0.22 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O11B−0.0061 (2)0.68797 (7)0.41185 (9)0.0408 (4)
O12B−0.0380 (2)0.64765 (8)0.26602 (10)0.0556 (5)
O31B−0.5921 (3)0.46963 (8)0.17213 (10)0.0567 (5)
O32B−0.8865 (3)0.46500 (9)0.24178 (11)0.0703 (6)
O51B−0.8471 (2)0.55899 (8)0.55381 (10)0.0514 (5)
O52B−0.5787 (3)0.62813 (8)0.60351 (10)0.0576 (6)
N3B−0.6966 (3)0.48464 (8)0.23584 (11)0.0416 (5)
N5B−0.6770 (3)0.59011 (8)0.54409 (10)0.0363 (5)
C1B−0.2967 (3)0.60944 (8)0.36270 (11)0.0264 (5)
C2B−0.3972 (3)0.56537 (8)0.29419 (11)0.0288 (5)
C3B−0.5892 (3)0.53100 (8)0.30888 (11)0.0289 (5)
C4B−0.6880 (3)0.53844 (8)0.38905 (12)0.0293 (5)
C5B−0.5807 (3)0.58130 (8)0.45649 (11)0.0265 (5)
C6B−0.3873 (3)0.61637 (8)0.44556 (11)0.0269 (5)
C11B−0.0952 (3)0.65174 (9)0.34516 (13)0.0327 (5)
N1A0.6514 (2)0.81846 (7)0.36517 (9)0.0288 (4)
N8A0.3270 (3)0.75625 (8)0.33371 (10)0.0364 (5)
C2A0.8281 (3)0.85009 (9)0.43221 (13)0.0350 (6)
C3A0.7557 (3)0.91508 (9)0.47621 (13)0.0378 (6)
C4A0.6172 (3)0.90383 (10)0.55531 (13)0.0390 (6)
C5A0.4046 (3)0.86226 (10)0.52884 (13)0.0383 (6)
C6A0.4433 (3)0.78996 (9)0.49381 (11)0.0334 (5)
C7A0.4773 (3)0.78797 (8)0.39270 (11)0.0262 (5)
C9A0.3565 (6)0.74500 (17)0.2353 (2)0.0357 (10)0.735 (3)
C10A0.4681 (5)0.80757 (15)0.20241 (17)0.0364 (8)0.735 (3)
C11A0.6839 (3)0.82115 (10)0.26593 (12)0.0364 (6)
C13A0.3000 (16)0.7705 (5)0.2305 (8)0.0357 (10)0.265 (3)
C12A0.5368 (12)0.7669 (4)0.2074 (5)0.0364 (8)0.265 (3)
H2B−0.334700.558900.237800.0350*
H4B−0.822600.515300.397200.0350*
H6B−0.317000.645000.494300.0320*
H8A0.217 (3)0.7342 (9)0.3570 (12)0.0440*
H10A0.499200.800700.137300.0440*0.735 (3)
H21A0.958300.860300.399500.0420*
H22A0.878100.817000.482700.0420*
H31A0.667000.942800.426800.0450*
H32A0.891300.941600.500800.0450*
H41A0.575200.948800.578700.0470*
H42A0.712000.880500.607600.0470*
H51A0.305500.886900.479200.0460*
H52A0.324800.859000.584400.0460*
H61A0.576900.770300.532500.0400*
H62A0.312500.761200.502300.0400*
H91A0.209200.737600.196500.0430*0.735 (3)
H92A0.451200.704300.229900.0430*0.735 (3)
H11A0.366800.847300.202800.0440*0.735 (3)
H12A0.797100.786800.254100.0440*0.735 (3)
H13A0.741500.866700.251700.0440*0.735 (3)
H14A0.536700.775500.139600.0440*0.265 (3)
H15A0.599400.720900.222100.0440*0.265 (3)
H16A0.234300.816200.216200.0430*0.265 (3)
H17A0.203300.735900.194900.0430*0.265 (3)
H18A0.843900.812900.260600.0440*0.265 (3)
H19A0.643800.867100.240500.0440*0.265 (3)
U11U22U33U12U13U23
O11B0.0376 (7)0.0403 (8)0.0454 (7)−0.0139 (6)0.0090 (6)−0.0054 (6)
O12B0.0558 (9)0.0740 (11)0.0419 (8)−0.0258 (8)0.0238 (7)−0.0043 (7)
O31B0.0690 (10)0.0566 (10)0.0423 (8)0.0063 (8)0.0003 (7)−0.0213 (7)
O32B0.0733 (11)0.0811 (12)0.0539 (9)−0.0503 (10)−0.0006 (8)−0.0091 (9)
O51B0.0472 (8)0.0586 (9)0.0543 (8)−0.0128 (7)0.0276 (7)0.0036 (7)
O52B0.0663 (10)0.0729 (11)0.0380 (8)−0.0175 (8)0.0228 (7)−0.0229 (8)
N3B0.0534 (11)0.0353 (9)0.0329 (8)−0.0074 (8)−0.0055 (8)−0.0016 (7)
N5B0.0392 (9)0.0378 (9)0.0343 (8)−0.0006 (7)0.0132 (7)0.0021 (7)
C1B0.0250 (8)0.0242 (8)0.0298 (8)0.0011 (7)0.0034 (7)0.0032 (7)
C2B0.0342 (9)0.0280 (9)0.0251 (8)0.0037 (7)0.0070 (7)0.0017 (7)
C3B0.0338 (9)0.0244 (9)0.0268 (8)−0.0015 (7)−0.0021 (7)−0.0001 (7)
C4B0.0263 (8)0.0258 (9)0.0352 (9)−0.0016 (7)0.0021 (7)0.0055 (8)
C5B0.0284 (8)0.0259 (9)0.0264 (8)0.0035 (7)0.0078 (7)0.0013 (7)
C6B0.0275 (8)0.0247 (9)0.0279 (8)−0.0004 (7)0.0020 (7)−0.0018 (7)
C11B0.0297 (9)0.0309 (9)0.0382 (10)−0.0006 (8)0.0072 (8)0.0031 (8)
N1A0.0255 (7)0.0325 (8)0.0285 (7)−0.0044 (6)0.0039 (6)0.0020 (6)
N8A0.0358 (8)0.0484 (10)0.0250 (7)−0.0178 (7)0.0045 (6)−0.0008 (7)
C2A0.0236 (9)0.0388 (10)0.0410 (10)−0.0059 (8)−0.0007 (8)0.0001 (8)
C3A0.0347 (10)0.0330 (10)0.0434 (10)−0.0076 (8)−0.0020 (8)0.0000 (9)
C4A0.0405 (10)0.0399 (11)0.0343 (9)−0.0025 (8)−0.0032 (8)−0.0064 (9)
C5A0.0357 (10)0.0495 (12)0.0302 (9)−0.0046 (9)0.0062 (8)−0.0083 (8)
C6A0.0357 (10)0.0403 (10)0.0237 (8)−0.0113 (8)0.0024 (7)0.0050 (8)
C7A0.0254 (8)0.0250 (8)0.0272 (8)−0.0015 (7)0.0006 (7)0.0028 (7)
C9A0.0418 (19)0.041 (2)0.0236 (10)−0.0039 (14)0.0026 (12)−0.0018 (16)
C10A0.0443 (15)0.0390 (16)0.0263 (10)−0.0024 (12)0.0061 (10)0.0036 (12)
C11A0.0348 (10)0.0427 (11)0.0339 (9)−0.0043 (8)0.0126 (8)0.0047 (8)
C13A0.0418 (19)0.041 (2)0.0236 (10)−0.0039 (14)0.0026 (12)−0.0018 (16)
C12A0.0443 (15)0.0390 (16)0.0263 (10)−0.0024 (12)0.0061 (10)0.0036 (12)
O11B—C11B1.253 (2)C5A—C6A1.534 (3)
O12B—C11B1.238 (2)C6A—C7A1.498 (2)
O31B—N3B1.218 (2)C9A—C10A1.507 (4)
O32B—N3B1.221 (3)C10A—C11A1.503 (3)
O51B—N5B1.217 (2)C12A—C13A1.510 (12)
O52B—N5B1.223 (2)C12A—C11A1.555 (8)
N3B—C3B1.469 (2)C2A—H21A0.9900
N5B—C5B1.470 (2)C2A—H22A0.9900
N1A—C2A1.469 (2)C3A—H31A0.9900
N1A—C7A1.315 (2)C3A—H32A0.9900
N1A—C11A1.469 (2)C4A—H41A0.9900
N8A—C13A1.497 (11)C4A—H42A0.9900
N8A—C9A1.468 (3)C5A—H51A0.9900
N8A—C7A1.308 (2)C5A—H52A0.9900
N8A—H8A0.895 (18)C6A—H61A0.9900
C1B—C11B1.520 (3)C6A—H62A0.9900
C1B—C2B1.385 (2)C9A—H91A0.9900
C1B—C6B1.386 (2)C9A—H92A0.9900
C2B—C3B1.380 (2)C10A—H10A0.9900
C3B—C4B1.378 (2)C10A—H11A0.9900
C4B—C5B1.375 (2)C11A—H12A0.9900
C5B—C6B1.380 (2)C11A—H13A0.9900
C2B—H2B0.9500C12A—H14A0.9900
C4B—H4B0.9500C12A—H15A0.9900
C6B—H6B0.9500C13A—H16A0.9900
C2A—C3A1.515 (3)C13A—H17A0.9900
C3A—C4A1.518 (3)C11A—H18A0.9900
C4A—C5A1.520 (3)C11A—H19A0.9900
O31B—N3B—O32B124.33 (17)C3A—C2A—H22A109.00
O31B—N3B—C3B117.77 (17)H21A—C2A—H22A108.00
O32B—N3B—C3B117.89 (16)C2A—C3A—H31A109.00
O51B—N5B—O52B123.92 (16)C2A—C3A—H32A109.00
O51B—N5B—C5B118.63 (15)C4A—C3A—H31A109.00
O52B—N5B—C5B117.44 (16)C4A—C3A—H32A109.00
C2A—N1A—C11A116.09 (13)H31A—C3A—H32A108.00
C7A—N1A—C11A121.98 (14)C3A—C4A—H41A109.00
C2A—N1A—C7A121.91 (14)C3A—C4A—H42A109.00
C7A—N8A—C9A122.1 (2)C5A—C4A—H41A108.00
C7A—N8A—C13A121.6 (4)C5A—C4A—H42A108.00
C13A—N8A—H8A118.6 (12)H41A—C4A—H42A108.00
C9A—N8A—H8A119.0 (11)C4A—C5A—H51A109.00
C7A—N8A—H8A117.9 (11)C4A—C5A—H52A109.00
C2B—C1B—C6B119.23 (16)C6A—C5A—H51A109.00
C2B—C1B—C11B120.13 (15)C6A—C5A—H52A109.00
C6B—C1B—C11B120.60 (15)H51A—C5A—H52A108.00
C1B—C2B—C3B119.19 (15)C5A—C6A—H61A109.00
N3B—C3B—C2B119.14 (15)C5A—C6A—H62A109.00
N3B—C3B—C4B117.78 (16)C7A—C6A—H61A109.00
C2B—C3B—C4B123.08 (15)C7A—C6A—H62A109.00
C3B—C4B—C5B116.13 (16)H61A—C6A—H62A108.00
C4B—C5B—C6B123.01 (16)N8A—C9A—H91A110.00
N5B—C5B—C4B118.32 (16)N8A—C9A—H92A110.00
N5B—C5B—C6B118.67 (14)C10A—C9A—H91A110.00
C1B—C6B—C5B119.30 (15)C10A—C9A—H92A110.00
O11B—C11B—C1B116.66 (16)H91A—C9A—H92A108.00
O11B—C11B—O12B126.65 (17)C9A—C10A—H10A110.00
O12B—C11B—C1B116.68 (16)C9A—C10A—H11A110.00
C3B—C2B—H2B120.00C11A—C10A—H10A110.00
C1B—C2B—H2B120.00C11A—C10A—H11A110.00
C3B—C4B—H4B122.00H10A—C10A—H11A108.00
C5B—C4B—H4B122.00N1A—C11A—H12A109.00
C5B—C6B—H6B120.00N1A—C11A—H13A109.00
C1B—C6B—H6B120.00C10A—C11A—H12A109.00
N1A—C2A—C3A113.94 (15)C10A—C11A—H13A109.00
C2A—C3A—C4A114.29 (15)H12A—C11A—H13A108.00
C3A—C4A—C5A114.95 (15)C13A—C12A—H14A110.00
C4A—C5A—C6A114.65 (15)C13A—C12A—H15A110.00
C5A—C6A—C7A113.01 (14)H14A—C12A—H15A108.00
N1A—C7A—N8A121.94 (15)N8A—C13A—H16A111.00
N1A—C7A—C6A120.27 (15)N8A—C13A—H17A111.00
N8A—C7A—C6A117.79 (16)C12A—C13A—H16A111.00
N8A—C9A—C10A107.5 (2)C12A—C13A—H17A111.00
C9A—C10A—C11A109.8 (2)H16A—C13A—H17A109.00
N1A—C11A—C10A111.27 (16)N1A—C11A—H18A109.00
N8A—C13A—C12A103.6 (7)N1A—C11A—H19A109.00
N1A—C2A—H21A109.00C12A—C11A—H18A109.00
N1A—C2A—H22A109.00C12A—C11A—H19A109.00
C3A—C2A—H21A109.00H18A—C11A—H19A108.00
O31B—N3B—C3B—C2B12.0 (2)C6B—C1B—C11B—O11B5.9 (2)
O31B—N3B—C3B—C4B−168.62 (16)C6B—C1B—C11B—O12B−173.03 (16)
O32B—N3B—C3B—C2B−166.31 (17)C11B—C1B—C2B—C3B−175.52 (15)
O32B—N3B—C3B—C4B13.1 (2)C2B—C1B—C6B—C5B−2.6 (2)
O51B—N5B—C5B—C4B0.3 (2)C11B—C1B—C6B—C5B174.94 (15)
O51B—N5B—C5B—C6B−179.75 (16)C1B—C2B—C3B—N3B179.56 (15)
O52B—N5B—C5B—C4B179.61 (16)C1B—C2B—C3B—C4B0.2 (3)
O52B—N5B—C5B—C6B−0.5 (2)C2B—C3B—C4B—C5B−1.7 (2)
C2A—N1A—C11A—C10A−162.56 (17)N3B—C3B—C4B—C5B178.91 (15)
C7A—N1A—C2A—C3A−71.6 (2)C3B—C4B—C5B—C6B1.1 (2)
C11A—N1A—C2A—C3A110.16 (17)C3B—C4B—C5B—N5B−178.96 (15)
C2A—N1A—C7A—N8A−175.79 (16)N5B—C5B—C6B—C1B−178.93 (15)
C2A—N1A—C7A—C6A5.5 (2)C4B—C5B—C6B—C1B1.0 (3)
C11A—N1A—C7A—N8A2.4 (3)N1A—C2A—C3A—C4A78.97 (19)
C11A—N1A—C7A—C6A−176.35 (15)C2A—C3A—C4A—C5A−57.1 (2)
C7A—N1A—C11A—C10A19.2 (2)C3A—C4A—C5A—C6A60.0 (2)
C9A—N8A—C7A—C6A−173.3 (2)C4A—C5A—C6A—C7A−81.00 (19)
C9A—N8A—C7A—N1A7.9 (3)C5A—C6A—C7A—N1A63.5 (2)
C7A—N8A—C9A—C10A−37.5 (3)C5A—C6A—C7A—N8A−115.29 (18)
C6B—C1B—C2B—C3B2.0 (2)N8A—C9A—C10A—C11A55.9 (3)
C2B—C1B—C11B—O11B−176.60 (16)C9A—C10A—C11A—N1A−48.3 (3)
C2B—C1B—C11B—O12B4.4 (2)
D—H···AD—HH···AD···AD—H···A
N8A—H8A···O11B0.90 (2)1.88 (2)2.777 (2)177 (2)
N8A—H8A···O12B0.90 (2)2.53 (2)3.117 (2)124 (1)
C10A—H11A···O32Bi0.992.443.247 (3)138
C11A—H13A···O52Bii0.992.523.071 (2)115
C2A—H21A···O31Biii0.992.563.309 (2)133
C6A—H62A···O11B0.992.603.438 (2)143
C9A—H91A···O12B0.992.603.127 (4)114
C9H17N2+·C7H3N2O7F(000) = 800
Mr = 380.36Dx = 1.489 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1891 reflections
a = 6.1537 (3) Åθ = 3.5–26.6°
b = 19.1541 (14) ŵ = 0.12 mm1
c = 14.5527 (11) ÅT = 200 K
β = 98.343 (6)°Needle, yellow
V = 1697.2 (2) Å30.30 × 0.13 × 0.10 mm
Z = 4
Oxford Diffraction Gemini-S CCD-detector diffractometer3339 independent reflections
Radiation source: Enhance (Mo) X-ray source2347 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −23→23
Tmin = 0.920, Tmax = 0.990l = −17→17
7800 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0374P)2 + 0.7569P] where P = (Fo2 + 2Fc2)/3
3339 reflections(Δ/σ)max < 0.001
263 parametersΔρmax = 0.29 e Å3
3 restraintsΔρmin = −0.29 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O2B0.8426 (4)0.56153 (13)0.78929 (15)0.0433 (8)0.720
O11B0.5084 (3)0.68879 (9)0.59293 (13)0.0433 (6)
O12B0.5450 (3)0.64525 (10)0.73596 (13)0.0522 (7)
O31B1.1116 (4)0.45700 (12)0.81707 (17)0.0819 (10)
O32B1.4080 (4)0.47261 (13)0.75765 (15)0.0761 (9)
O51B1.3286 (3)0.55867 (11)0.44585 (14)0.0594 (7)
O52B1.0707 (4)0.63206 (11)0.39870 (14)0.0670 (8)
N3B1.2118 (4)0.48306 (12)0.76028 (16)0.0467 (8)
N5B1.1654 (3)0.59169 (11)0.45698 (15)0.0407 (7)
C1B0.8002 (3)0.60950 (11)0.63899 (16)0.0268 (7)
C2B0.9062 (3)0.56600 (12)0.70947 (16)0.0297 (7)
C3B1.0956 (4)0.53052 (12)0.69146 (16)0.0310 (7)
C4B1.1816 (3)0.53943 (11)0.61041 (16)0.0308 (7)
C5B1.0735 (3)0.58226 (11)0.54278 (15)0.0276 (7)
C6B0.8810 (3)0.61671 (11)0.55531 (15)0.0263 (7)
C11B0.6029 (4)0.65080 (12)0.65595 (19)0.0346 (8)
O21B0.7762 (10)0.6571 (3)0.4915 (5)0.052 (3)0.280
N1A−0.1524 (3)0.82026 (10)0.63820 (13)0.0293 (6)
N8A0.1714 (3)0.76040 (11)0.67301 (14)0.0369 (7)
C2A−0.3262 (3)0.85087 (13)0.56984 (17)0.0357 (8)
C3A−0.2606 (4)0.91805 (13)0.52684 (18)0.0397 (8)
C4A−0.1188 (4)0.90797 (14)0.45044 (17)0.0409 (8)
C5A0.0934 (4)0.86814 (13)0.48033 (17)0.0393 (9)
C6A0.0612 (4)0.79368 (13)0.51409 (16)0.0340 (8)
C7A0.0226 (3)0.79083 (11)0.61294 (15)0.0265 (7)
C9A0.1399 (9)0.7478 (2)0.7696 (4)0.0366 (18)0.686 (4)
C10A0.0234 (6)0.8111 (2)0.8005 (3)0.0379 (11)0.686 (4)
C11A−0.1871 (4)0.82349 (13)0.73612 (16)0.0363 (8)
C13A0.189 (2)0.7738 (7)0.7752 (11)0.0366 (18)0.314 (4)
C12A−0.0464 (13)0.7704 (5)0.7958 (6)0.0379 (11)0.314 (4)
H4B1.313500.516500.601100.0370*
H6B0.802400.643800.507000.0320*0.720
H2B0.738700.589500.791900.0650*0.720
H21B0.660800.672000.509300.0770*0.280
H61B0.854600.561200.767700.0360*0.280
H8A0.280 (3)0.7394 (11)0.6508 (15)0.0320*
H10A−0.008900.803800.864500.0460*0.686 (4)
H21A−0.456700.859900.600600.0430*
H22A−0.369100.816400.519800.0430*
H31A−0.179400.947500.576300.0480*
H32A−0.395300.943600.500800.0480*
H41A−0.205700.882700.398200.0490*
H42A−0.082100.954400.427200.0490*
H51A0.183000.894400.530800.0470*
H52A0.177200.866100.427300.0470*
H61A−0.065700.772300.474400.0410*
H62A0.193100.765700.507200.0410*
H91A0.283500.741400.809200.0440*0.686 (4)
H92A0.050400.705400.773900.0440*0.686 (4)
H11A0.119500.852600.800700.0460*0.686 (4)
H12A−0.296400.787800.747600.0440*0.686 (4)
H13A−0.246500.869900.749100.0440*0.686 (4)
H14A−0.106100.722900.782300.0460*0.314 (4)
H15A−0.049500.780400.862300.0460*0.314 (4)
H16A0.253400.820400.791200.0440*0.314 (4)
H17A0.280800.737900.811000.0440*0.314 (4)
H18A−0.343900.814600.740100.0440*0.314 (4)
H19A−0.150900.871000.760600.0440*0.314 (4)
U11U22U33U12U13U23
O2B0.0472 (13)0.0563 (16)0.0297 (14)0.0095 (12)0.0168 (11)0.0083 (12)
O11B0.0356 (9)0.0369 (10)0.0579 (12)0.0124 (8)0.0087 (8)0.0063 (9)
O12B0.0492 (11)0.0640 (13)0.0484 (12)0.0080 (10)0.0245 (9)−0.0040 (10)
O31B0.0774 (15)0.0847 (18)0.0749 (17)−0.0226 (13)−0.0181 (12)0.0525 (14)
O32B0.0708 (15)0.0894 (18)0.0629 (15)0.0492 (13)−0.0082 (11)0.0045 (12)
O51B0.0542 (11)0.0636 (13)0.0680 (14)0.0066 (10)0.0346 (10)−0.0115 (11)
O52B0.0918 (15)0.0703 (15)0.0456 (13)0.0168 (13)0.0323 (11)0.0224 (11)
N3B0.0592 (15)0.0338 (13)0.0411 (14)0.0003 (11)−0.0127 (12)0.0001 (11)
N5B0.0464 (12)0.0388 (13)0.0405 (13)−0.0040 (10)0.0189 (10)−0.0056 (11)
C1B0.0259 (11)0.0216 (12)0.0323 (13)−0.0038 (9)0.0021 (9)−0.0035 (10)
C2B0.0341 (12)0.0270 (13)0.0280 (13)−0.0057 (10)0.0044 (10)−0.0019 (10)
C3B0.0361 (12)0.0241 (12)0.0300 (14)−0.0006 (10)−0.0049 (10)0.0015 (10)
C4B0.0256 (11)0.0245 (12)0.0406 (15)−0.0010 (10)−0.0006 (10)−0.0054 (11)
C5B0.0297 (11)0.0257 (12)0.0285 (13)−0.0056 (10)0.0077 (10)−0.0023 (10)
C6B0.0288 (11)0.0214 (12)0.0275 (13)−0.0017 (9)−0.0001 (9)0.0021 (10)
C11B0.0292 (12)0.0284 (13)0.0466 (16)−0.0028 (10)0.0068 (11)−0.0055 (12)
O21B0.043 (4)0.059 (5)0.053 (4)0.008 (3)0.009 (3)0.025 (4)
N1A0.0254 (9)0.0319 (11)0.0304 (11)0.0014 (8)0.0038 (8)−0.0007 (9)
N8A0.0333 (11)0.0476 (13)0.0299 (12)0.0157 (10)0.0051 (9)0.0034 (10)
C2A0.0254 (11)0.0378 (14)0.0427 (15)0.0059 (10)0.0006 (10)−0.0026 (12)
C3A0.0358 (13)0.0339 (14)0.0464 (16)0.0066 (11)−0.0044 (11)0.0003 (12)
C4A0.0442 (14)0.0384 (15)0.0365 (15)−0.0024 (12)−0.0061 (11)0.0074 (12)
C5A0.0370 (13)0.0508 (17)0.0308 (14)−0.0005 (12)0.0075 (10)0.0080 (12)
C6A0.0340 (12)0.0413 (15)0.0262 (13)0.0081 (11)0.0029 (10)−0.0052 (11)
C7A0.0270 (11)0.0226 (12)0.0291 (13)−0.0006 (9)0.0014 (9)−0.0035 (10)
C9A0.042 (3)0.037 (4)0.0292 (18)0.001 (2)0.000 (2)0.005 (3)
C10A0.047 (2)0.041 (2)0.0263 (17)−0.0052 (17)0.0070 (16)−0.0033 (19)
C11A0.0363 (13)0.0419 (15)0.0335 (14)−0.0014 (11)0.0150 (11)−0.0058 (12)
C13A0.042 (3)0.037 (4)0.0292 (18)0.001 (2)0.000 (2)0.005 (3)
C12A0.047 (2)0.041 (2)0.0263 (17)−0.0052 (17)0.0070 (16)−0.0033 (19)
O2B—C2B1.281 (3)C3A—C4A1.522 (4)
O11B—C11B1.247 (3)C4A—C5A1.520 (4)
O12B—C11B1.271 (3)C5A—C6A1.531 (4)
O21B—C6B1.305 (7)C6A—C7A1.493 (3)
O31B—N3B1.208 (3)C9A—C10A1.510 (6)
O32B—N3B1.230 (4)C10A—C11A1.503 (5)
O51B—N5B1.217 (3)C12A—C13A1.523 (15)
O52B—N5B1.230 (3)C2A—H21A0.9900
O2B—H2B0.8400C2A—H22A0.9900
O21B—H21B0.8400C3A—H31A0.9900
N3B—C3B1.460 (3)C3A—H32A0.9900
N5B—C5B1.455 (3)C4A—H41A0.9900
N1A—C2A1.473 (3)C4A—H42A0.9900
N1A—C11A1.473 (3)C5A—H51A0.9900
N1A—C7A1.314 (3)C5A—H52A0.9900
N8A—C9A1.467 (6)C6A—H61A0.9900
N8A—C13A1.498 (16)C6A—H62A0.9900
N8A—C7A1.308 (3)C9A—H91A0.9900
N8A—H8A0.88 (2)C9A—H92A0.9900
C1B—C11B1.499 (3)C10A—H10A0.9900
C1B—C6B1.387 (3)C10A—H11A0.9900
C1B—C2B1.406 (3)C11A—H12A0.9900
C2B—C3B1.406 (3)C11A—H13A0.9900
C3B—C4B1.372 (3)C12A—H14A0.9900
C4B—C5B1.376 (3)C12A—H15A0.9900
C5B—C6B1.391 (3)C13A—H16A0.9900
C2B—H61B0.9500C13A—H17A0.9900
C4B—H4B0.9500C11A—H18A0.9900
C6B—H6B0.9500C11A—H19A0.9900
C2A—C3A1.511 (3)
C2B—O2B—H2B109.00C9A—C10A—C11A110.2 (3)
C6B—O21B—H21B110.00N1A—C11A—C10A111.3 (2)
O32B—N3B—C3B117.7 (2)N8A—C13A—C12A104.7 (9)
O31B—N3B—O32B123.7 (2)N1A—C2A—H21A109.00
O31B—N3B—C3B118.6 (2)N1A—C2A—H22A109.00
O52B—N5B—C5B117.7 (2)C3A—C2A—H21A109.00
O51B—N5B—C5B118.7 (2)C3A—C2A—H22A109.00
O51B—N5B—O52B123.5 (2)H21A—C2A—H22A108.00
C2A—N1A—C11A116.36 (18)C2A—C3A—H31A109.00
C7A—N1A—C11A121.90 (19)C2A—C3A—H32A109.00
C2A—N1A—C7A121.74 (19)C4A—C3A—H31A109.00
C7A—N8A—C13A122.0 (5)C4A—C3A—H32A109.00
C7A—N8A—C9A122.5 (3)H31A—C3A—H32A108.00
C9A—N8A—H8A119.3 (14)C3A—C4A—H41A109.00
C13A—N8A—H8A119.6 (15)C3A—C4A—H42A109.00
C7A—N8A—H8A117.0 (14)C5A—C4A—H41A109.00
C2B—C1B—C6B120.78 (18)C5A—C4A—H42A109.00
C2B—C1B—C11B119.6 (2)H41A—C4A—H42A108.00
C6B—C1B—C11B119.6 (2)C4A—C5A—H51A109.00
O2B—C2B—C1B122.0 (2)C4A—C5A—H52A109.00
C1B—C2B—C3B117.4 (2)C6A—C5A—H51A109.00
O2B—C2B—C3B120.5 (2)C6A—C5A—H52A109.00
N3B—C3B—C4B117.1 (2)H51A—C5A—H52A108.00
C2B—C3B—C4B122.3 (2)C5A—C6A—H61A109.00
N3B—C3B—C2B120.6 (2)C5A—C6A—H62A109.00
C3B—C4B—C5B118.84 (19)C7A—C6A—H61A109.00
C4B—C5B—C6B121.43 (19)C7A—C6A—H62A109.00
N5B—C5B—C4B118.69 (18)H61A—C6A—H62A108.00
N5B—C5B—C6B119.88 (19)N8A—C9A—H91A110.00
O21B—C6B—C1B118.7 (3)N8A—C9A—H92A110.00
O21B—C6B—C5B122.0 (3)C10A—C9A—H91A110.00
C1B—C6B—C5B119.23 (19)C10A—C9A—H92A110.00
O12B—C11B—C1B116.6 (2)H91A—C9A—H92A109.00
O11B—C11B—C1B119.3 (2)C9A—C10A—H10A110.00
O11B—C11B—O12B124.1 (2)C9A—C10A—H11A110.00
C3B—C2B—H61B121.00C11A—C10A—H10A110.00
C1B—C2B—H61B122.00C11A—C10A—H11A110.00
C5B—C4B—H4B121.00H10A—C10A—H11A108.00
C3B—C4B—H4B121.00N1A—C11A—H12A109.00
C1B—C6B—H6B120.00N1A—C11A—H13A109.00
C5B—C6B—H6B121.00C10A—C11A—H12A109.00
N1A—C2A—C3A114.04 (18)C10A—C11A—H13A109.00
C2A—C3A—C4A114.2 (2)H12A—C11A—H13A108.00
C3A—C4A—C5A114.5 (2)C13A—C12A—H15A110.00
C4A—C5A—C6A114.4 (2)H14A—C12A—H15A108.00
C5A—C6A—C7A112.9 (2)N8A—C13A—H16A111.00
N1A—C7A—N8A121.8 (2)N8A—C13A—H17A111.00
N1A—C7A—C6A120.35 (19)C12A—C13A—H16A111.00
N8A—C7A—C6A117.82 (19)C12A—C13A—H17A111.00
N8A—C9A—C10A106.7 (3)H16A—C13A—H17A109.00
O31B—N3B—C3B—C2B23.9 (3)C6B—C1B—C11B—O11B3.1 (3)
O31B—N3B—C3B—C4B−157.2 (2)C6B—C1B—C11B—O12B−175.8 (2)
O32B—N3B—C3B—C2B−155.2 (2)C2B—C1B—C11B—O11B−179.4 (2)
O32B—N3B—C3B—C4B23.8 (3)C2B—C1B—C11B—O12B1.8 (3)
O51B—N5B—C5B—C4B3.7 (3)C11B—C1B—C6B—C5B175.2 (2)
O51B—N5B—C5B—C6B−176.8 (2)O2B—C2B—C3B—N3B5.6 (4)
O52B—N5B—C5B—C4B−177.5 (2)O2B—C2B—C3B—C4B−173.3 (2)
O52B—N5B—C5B—C6B2.0 (3)C1B—C2B—C3B—N3B−178.5 (2)
C2A—N1A—C7A—N8A−176.4 (2)C1B—C2B—C3B—C4B2.7 (3)
C2A—N1A—C7A—C6A6.0 (3)C2B—C3B—C4B—C5B−2.9 (3)
C11A—N1A—C7A—N8A2.7 (3)N3B—C3B—C4B—C5B178.3 (2)
C11A—N1A—C7A—C6A−175.0 (2)C3B—C4B—C5B—C6B0.4 (3)
C2A—N1A—C11A—C10A−163.0 (2)C3B—C4B—C5B—N5B179.9 (2)
C7A—N1A—C2A—C3A−71.7 (3)N5B—C5B—C6B—C1B−177.36 (19)
C11A—N1A—C2A—C3A109.2 (2)C4B—C5B—C6B—C1B2.1 (3)
C7A—N1A—C11A—C10A17.9 (3)N1A—C2A—C3A—C4A78.8 (3)
C7A—N8A—C9A—C10A−38.8 (4)C2A—C3A—C4A—C5A−57.5 (3)
C9A—N8A—C7A—C6A−173.2 (3)C3A—C4A—C5A—C6A61.0 (3)
C9A—N8A—C7A—N1A9.1 (4)C4A—C5A—C6A—C7A−82.0 (3)
C6B—C1B—C2B—C3B0.0 (3)C5A—C6A—C7A—N1A63.3 (3)
C11B—C1B—C2B—O2B−1.6 (3)C5A—C6A—C7A—N8A−114.5 (2)
C11B—C1B—C2B—C3B−177.5 (2)N8A—C9A—C10A—C11A56.2 (4)
C2B—C1B—C6B—C5B−2.3 (3)C9A—C10A—C11A—N1A−47.7 (4)
C6B—C1B—C2B—O2B175.9 (2)
D—H···AD—HH···AD···AD—H···A
N8A—H8A···O11B0.88 (2)1.99 (2)2.871 (3)176 (2)
O2B—H2B···O12B0.841.722.473 (3)149
C10A—H11A···O32Bi0.992.453.251 (5)138
C11A—H13A···O52Bii0.992.593.093 (3)111
C2A—H21A···O31Biii0.992.483.281 (3)138
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The Cambridge Structural Database in retrospect and prospect.

Authors:  Colin R Groom; Frank H Allen
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-02       Impact factor: 15.336

3.  Polar alkaloids from the Caribbean marine sponge Niphates digitalis.

Authors:  Erik L Regalado; Judith Mendiola; Abilio Laguna; Clara Nogueiras; Olivier P Thomas
Journal:  Nat Prod Commun       Date:  2010-08       Impact factor: 0.986

4.  Activation of carbon dioxide by bicyclic amidines.

Authors:  Eduardo R Pérez; Regina H A Santos; Maria T P Gambardella; Luiz G M de Macedo; Ubirajara P Rodrigues-Filho; Jean-Claude Launay; Douglas W Franco
Journal:  J Org Chem       Date:  2004-11-12       Impact factor: 4.354

5.  Reversible uptake of COS, CS2, and SO2: ionic liquids with O-alkylxanthate, O-alkylthiocarbonyl, and O-alkylsulfite anions.

Authors:  David J Heldebrant; Clement R Yonker; Philip G Jessop; Lam Phan
Journal:  Chemistry       Date:  2009-08-03       Impact factor: 5.236

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.