Literature DB >> 27006633

A Review on the Bioinformatics Tools for Neuroimaging.

Mei Yen Man1, Mei Sin Ong1, Mohd Saberi Mohamad1, Safaai Deris2, Ghazali Sulong3, Jasmy Yunus4, Fauzan Khairi Che Harun4.   

Abstract

Neuroimaging is a new technique used to create images of the structure and function of the nervous system in the human brain. Currently, it is crucial in scientific fields. Neuroimaging data are becoming of more interest among the circle of neuroimaging experts. Therefore, it is necessary to develop a large amount of neuroimaging tools. This paper gives an overview of the tools that have been used to image the structure and function of the nervous system. This information can help developers, experts, and users gain insight and a better understanding of the neuroimaging tools available, enabling better decision making in choosing tools of particular research interest. Sources, links, and descriptions of the application of each tool are provided in this paper as well. Lastly, this paper presents the language implemented, system requirements, strengths, and weaknesses of the tools that have been widely used to image the structure and function of the nervous system.

Entities:  

Keywords:  bioinformatics; image analysis; medical imaging; nervous system; neuroimaging

Year:  2015        PMID: 27006633      PMCID: PMC4795522     

Source DB:  PubMed          Journal:  Malays J Med Sci        ISSN: 1394-195X


  30 in total

Review 1.  Functional brain imaging and human brain function.

Authors:  Marcus E Raichle
Journal:  J Neurosci       Date:  2003-05-15       Impact factor: 6.167

Review 2.  BrainVoyager--past, present, future.

Authors:  Rainer Goebel
Journal:  Neuroimage       Date:  2012-01-25       Impact factor: 6.556

3.  Volumetric neuroimage analysis extensions for the MIPAV software package.

Authors:  Pierre-Louis Bazin; Jennifer L Cuzzocreo; Michael A Yassa; William Gandler; Matthew J McAuliffe; Susan S Bassett; Dzung L Pham
Journal:  J Neurosci Methods       Date:  2007-05-29       Impact factor: 2.390

4.  An image-processing system for qualitative and quantitative volumetric analysis of brain images.

Authors:  A F Goldszal; C Davatzikos; D L Pham; M X Yan; R N Bryan; S M Resnick
Journal:  J Comput Assist Tomogr       Date:  1998 Sep-Oct       Impact factor: 1.826

5.  Automated image registration: I. General methods and intrasubject, intramodality validation.

Authors:  R P Woods; S T Grafton; C J Holmes; S R Cherry; J C Mazziotta
Journal:  J Comput Assist Tomogr       Date:  1998 Jan-Feb       Impact factor: 1.826

6.  BioImage Suite: An integrated medical image analysis suite: An update.

Authors:  Xenophon Papademetris; Marcel P Jackowski; Nallakkandi Rajeevan; Marcello DiStasio; Hirohito Okuda; R Todd Constable; Lawrence H Staib
Journal:  Insight J       Date:  2006

7.  Different patterns of brain activation in normal aging and Alzheimer's disease from cognitional sight: meta analysis using activation likelihood estimation.

Authors:  Saeed Sadigh-Eteghad; Alireza Majdi; Mehdi Farhoudi; Mahnaz Talebi; Javad Mahmoudi
Journal:  J Neurol Sci       Date:  2014-06-06       Impact factor: 3.181

8.  Effects of saccades on visual processing in primate MSTd.

Authors:  Shaun L Cloherty; Michael J Mustari; Marcello G P Rosa; Michael R Ibbotson
Journal:  Vision Res       Date:  2010-08-21       Impact factor: 1.886

Review 9.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

10.  COINS: An Innovative Informatics and Neuroimaging Tool Suite Built for Large Heterogeneous Datasets.

Authors:  Adam Scott; Will Courtney; Dylan Wood; Raul de la Garza; Susan Lane; Margaret King; Runtang Wang; Jody Roberts; Jessica A Turner; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2011-12-23       Impact factor: 4.081

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  2 in total

1.  Exploring brain connectivity changes in major depressive disorder using functional-structural data fusion: A CAN-BIND-1 study.

Authors:  Sondos Ayyash; Andrew D Davis; Gésine L Alders; Glenda MacQueen; Stephen C Strother; Stefanie Hassel; Mojdeh Zamyadi; Stephen R Arnott; Jacqueline K Harris; Raymond W Lam; Roumen Milev; Daniel J Müller; Sidney H Kennedy; Susan Rotzinger; Benicio N Frey; Luciano Minuzzi; Geoffrey B Hall
Journal:  Hum Brain Mapp       Date:  2021-07-23       Impact factor: 5.038

2.  Validation and Clinical Applicability of Whole-Volume Automated Segmentation of Optical Coherence Tomography in Retinal Disease Using Deep Learning.

Authors:  Marc Wilson; Reena Chopra; Megan Z Wilson; Charlotte Cooper; Patricia MacWilliams; Yun Liu; Ellery Wulczyn; Daniela Florea; Cían O Hughes; Alan Karthikesalingam; Hagar Khalid; Sandra Vermeirsch; Luke Nicholson; Pearse A Keane; Konstantinos Balaskas; Christopher J Kelly
Journal:  JAMA Ophthalmol       Date:  2021-09-01       Impact factor: 7.389

  2 in total

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