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Literature DB >> 25364771

BioImage Suite: An integrated medical image analysis suite: An update.

Xenophon Papademetris¹, Marcel P Jackowski², Nallakkandi Rajeevan³, Marcello DiStasio⁴, Hirohito Okuda³, R Todd Constable⁵, Lawrence H Staib¹.

Abstract

BioImage Suite is an NIH-supported medical image analysis software suite developed at Yale. It leverages both the Visualization Toolkit (VTK) and the Insight Toolkit (ITK) and it includes many additional algorithms for image analysis especially in the areas of segmentation, registration, diffusion weighted image processing and fMRI analysis. BioImage Suite has a user-friendly user interface developed in the Tcl scripting language. A final beta version is freely available for download.

Entities: Chemical Gene

Year: 2006 PMID： 25364771 PMCID： PMC4213804

Source DB: PubMed Journal: Insight J ISSN： 2327-770X

9 in total

1. Parametric estimate of intensity inhomogeneities applied to MRI.

Authors: M Styner; C Brechbühler; G Székely; G Gerig
Journal: IEEE Trans Med Imaging Date: 2000-03 Impact factor: 10.048

2. BrainSuite: an automated cortical surface identification tool.

Authors: David W Shattuck; Richard M Leahy
Journal: Med Image Anal Date: 2002-06 Impact factor: 8.545

3. Model-driven brain shift compensation.

Authors: Oskar Skrinjar; Arya Nabavi; James Duncan
Journal: Med Image Anal Date: 2002-12 Impact factor: 8.545

4. Integrated Intensity and Point-Feature Nonrigid Registration.

Authors: Xenophon Papademetris; Andrea P Jackowski; Robert T Schultz; Lawrence H Staib; James S Duncan
Journal: Med Image Comput Comput Assist Interv Date: 2001-09-02

Review 5. Geometric strategies for neuroanatomic analysis from MRI.

Authors: James S Duncan; Xenophon Papademetris; Jing Yang; Marcel Jackowski; Xiaolan Zeng; Lawrence H Staib
Journal: Neuroimage Date: 2004 Impact factor: 6.556

6. Automated three-dimensional registration of magnetic resonance and positron emission tomography brain images by multiresolution optimization of voxel similarity measures.

Authors: C Studholme; D L Hill; D J Hawkes
Journal: Med Phys Date: 1997-01 Impact factor: 4.071

7. BioImage Suite: An integrated medical image analysis suite: An update.

Authors: Xenophon Papademetris; Marcel P Jackowski; Nallakkandi Rajeevan; Marcello DiStasio; Hirohito Okuda; R Todd Constable; Lawrence H Staib
Journal: Insight J Date: 2006

8. The "obese insulin-sensitive" adolescent: importance of adiponectin and lipid partitioning.

Authors: Ram Weiss; Sara E Taksali; Sylvie Dufour; Catherine W Yeckel; Xenophon Papademetris; Gary Cline; William V Tamborlane; James Dziura; Gerald I Shulman; Sonia Caprio
Journal: J Clin Endocrinol Metab Date: 2005-03-29 Impact factor: 5.958

9. Estimation of 3-D left ventricular deformation from medical images using biomechanical models.

Authors: Xenophon Papademetris; Albert J Sinusas; Donald P Dione; R Todd Constable; James S Duncan
Journal: IEEE Trans Med Imaging Date: 2002-07 Impact factor: 10.048

9 in total

122 in total

1. Non-rigid registration with missing correspondences in preoperative and postresection brain images.

Authors: Nicha Chitphakdithai; James S Duncan
Journal: Med Image Comput Comput Assist Interv Date: 2010

2. Imaging the cannabinoid CB1 receptor in humans with [11C]OMAR: assessment of kinetic analysis methods, test-retest reproducibility, and gender differences.

Authors: Marc D Normandin; Ming-Qiang Zheng; Kuo-Shyan Lin; N Scott Mason; Shu-Fei Lin; Jim Ropchan; David Labaree; Shannan Henry; Wendol A Williams; Richard E Carson; Alexander Neumeister; Yiyun Huang
Journal: J Cereb Blood Flow Metab Date: 2015-04-01 Impact factor: 6.200

3. Fully automatic multi-atlas segmentation of CTA for partial volume correction in cardiac SPECT/CT.

Authors: Qingyi Liu; Hassan Mohy-Ud-Din; Nabil E Boutagy; Mingyan Jiang; Silin Ren; John C Stendahl; Albert J Sinusas; Chi Liu
Journal: Phys Med Biol Date: 2017-03-07 Impact factor: 3.609

4. A comprehensive system for intraoperative 3D brain deformation recovery.

Authors: Christine DeLorenzo; Xenophon Papademetris; Kenneth P Vives; Dennis D Spencer; James S Duncan
Journal: Med Image Comput Comput Assist Interv Date: 2007

Review 5. Radiomics in precision medicine for lung cancer.

Authors: Julie Constanzo; Lise Wei; Huan-Hsin Tseng; Issam El Naqa
Journal: Transl Lung Cancer Res Date: 2017-12

6. Predicting response to psychiatric surgery: a systematic review of neuroimaging findings.

Authors: Benjamin Davidson; Hrishikesh Suresh; Maged Goubran; Jennifer S Rabin; Ying Meng; Karim Mithani; Christopher B Pople; Peter Giacobbe; Clement Hamani; Nir Lipsman
Journal: J Psychiatry Neurosci Date: 2020-11-01 Impact factor: 6.186

7. Flow network tracking for spatiotemporal and periodic point matching: Applied to cardiac motion analysis.

Authors: Nripesh Parajuli; Allen Lu; Kevinminh Ta; John Stendahl; Nabil Boutagy; Imran Alkhalil; Melissa Eberle; Geng-Shi Jeng; Maria Zontak; Matthew O'Donnell; Albert J Sinusas; James S Duncan
Journal: Med Image Anal Date: 2019-04-18 Impact factor: 8.545