| Literature DB >> 26998328 |
Carlos E P Bernardo1, Pedro J Silva1.
Abstract
We have studied the role of Cu(+)-phenantroline as a catalyst in the cyclization ofEntities:
Keywords: Cu(I) reactivity; C–C coupling; C–H bond activation
Year: 2016 PMID: 26998328 PMCID: PMC4785979 DOI: 10.1098/rsos.150582
Source DB: PubMed Journal: R Soc Open Sci ISSN: 2054-5703 Impact factor: 2.963
Scheme 1.Reaction mechanism proposed by Bernini et al. [3] The phenanthroline ligand has been omitted for clarity.
Figure 1.Optimized geometries of (a) TS1, (b) TS2 and (c) 4 at the PBE1PW91/6-31G(d) + SBKJ level of theory.
Relative energies (kcal mol−1) versus isolated reactants of the intermediates and transition states in the initial stages of the reaction mechanism. (All values include DFT-D3dispersion corrections, zero-point vibrational energy effects at 373.15 K, andsolvation effects in nitromethane.)
| B3LYP | PBE0 | PBE1PW91 | PBEPW91 | |
|---|---|---|---|---|
| 1.3 | −0.3 | −0.4 | −4.7 | |
| 0.7 | 0.5 | 0.5 | −4.1 | |
| 0.3 | −1.5 | −1.3 | −2.6 | |
| −25.1 | −34.5 | −23.8 | −38.6 | |
| −28.5 | −35.2 | −30.9 | −38.9 | |
| −7.7 | −13.3 | −10.4 | −19.7 | |
| −26.0 | −31.6 | −25.5 | −37.4 |
Scheme 2.Reaction pathways leading from intermediate 4 to indole product.
Figure 2.Optimized geometries of (a) TS, (b) TS and (c) TS at the PBE1PW91/6-31G(d) + SBKJ level of theory (pathway depicted in blue in scheme 2).
Figure 3.Optimized geometries of (a) TS and (b) TS at the PBE1PW91/6-31G(d) + SBKJ level of theory (pathway depicted in green in scheme 2). In (b), the phenanthroline ligand has been partially deleted, for ease of viewing.
Relative energies (kcal mol−1) versus isolated reactants of the intermediates and transition states in the evaluated reaction mechanisms (using a single carbonate). (All values include DFT-D3dispersion corrections, zero-point vibrational energy effects at 373.15 K, and solvation effects in nitromethane.)
| 1st step | 2nd step | 3rd step | B3LYP | PBE0 | PBE1PW91 | PBEPW91 |
|---|---|---|---|---|---|---|
| −26.0 | −31.6 | −25.5 | −37.4 | |||
| TS | 29.7 | 17.7 | 21.2 | 3.7 | ||
| −2.3 | −14.9 | −10.1 | −28.8 | |||
| TS | 4.3 | −8.1 | −4.7 | −18.8 | ||
| −27.7 | −37.6 | −35.0 | −40.1 | |||
| TS | −27.0 | −37.2 | −34.4 | −38.0 | ||
| −28.7 | −37.9 | −35.3 | −40.2 | |||
| −8.4 | −20.9 | −17.0 | −31.3 | |||
| TS | 0.7 | −8.3 | −5.1 | −23.6 | ||
| −1.4 | −15.1 | −11.4 | −30.8 | |||
| TS | no TS | no TS | no TS | no TS | ||
| extra LiHCO3 | ||||||
| −25.6 | −27.8 | −24.7 | −35.0 | |||
| TS | 19.4 | 11.0 | 10.0 | −3.2 | ||
| −1.4 | −15.1 | −11.4 | −30.8 | |||
| TS | 5.3 | −7.5 | −4.1 | −18.6 | ||
| extra LiHCO3 | ||||||
| −43.0 | −47.5 | −45.7 | −52.3 |
Figure 4.Potential energy surfaces of the different mechanisms studied in this work. Blue: B3LYP; green: PBE1PW91; red: PBE0; violet: PBEPW91. Species with an asterisk contain two molecules of lithium carbonate.
Figure 5.Optimized geometries of (a) 4+LiHCO3 and (b) at the PBE1PW91/6-31G(d) + SBKJ level of theory (pathway depicted in green in scheme 2). The phenanthroline ligand has been partially deleted, for ease of viewing.
Figure 6.Optimized geometry of the transition state of H2 evolution from Cu+ (phen)-hydride at the PBE1PW91/6-31G(d) + SBKJ level of theory.
Scheme 3.Cu+ -catalysed ciclization of N-2-bromophenyl-enaminone.
Relative energies (kcal mol−1) versus isolated reactants of the most characteristic transition states in the reaction of o-brominated substrates. (All values include DFT-D3 dispersion corrections, zero-point vibrational energy effects at 373.15 K, and solvation effects in nitromethane.)
| countercation(s) | B3LYP | PBE0 | PBE1PW91 | PBEPW91 | |
|---|---|---|---|---|---|
| TS | Li+ | 22.0 | 34.2 | 20.5 | 15.7 |
| TS | K+ | 16.7 | 26.0 | 16.9 | 18.5 |
| TS | Li+ | 53.9 | 51.5 | 51.8 | 41.4 |
| TS | K+ | 49.2 | 57.3 | 42.2 | 38.1 |
| TS | Li+ Li+ | 21.8 | 27.9 | 22.7 | 23.7 |
| TS | Li+ K+ | 21.9 | 26.0 | 20.3 | 15.8 |
| TS | Li+ Li+ | 31.8 | 28.1 | 27.1 | 28.3 |
| TS | Li+ K+ | 35.9 | 38.2 | 31.6 | 34.7 |
Scheme 4.Reaction pathways leading from the intermediate with ketone-bound catalyst (8) to indole product.
Free energies (kcal mol−1) of the reduction of key reaction intermediates by Cu+-phenantroline. (All values were obtained with the PBE0 functional, and include DFT-D3 dispersion corrections, zero-point vibrational energy effects at 373.15 K, and solvation effects in the given solvents.)
| intermediate | in nitromethane (kcal mol−1) | in tetrahydrofuran (kcal mol−1) |
|---|---|---|
| 72.5 | 92.8 | |
| 91.3 | 121.4 | |
| 72.2 | 95.5 | |
| 78.1 | 106.0 | |
| 63.3 | 88.3 | |
| 81.1 | 111.8 |
Scheme 5.Putative mechanism leading to a reduced indole analogue through coordination of Cu+-phenatroline by deprotonated substrate, followed by immediate ring closure. The phenanthroline ligand has been omitted for clarity.
Scheme 6.The most-favoured reaction mechanism for the Cu+-assisted indole synthesis. Rose arrows depict deprotonations by carbonate. Blue arrows depict reprotonations by hydrogencarbonate. The 5b and 5d states are most favoured when stabilized by two (hydrogen)carbonates, strongly suggesting that the best reaction rates will be observed when at least a twofold excess of base over N-aryl-enaminone is used.