Literature DB >> 26997922

Cross-Validation of Survival Bump Hunting by Recursive Peeling Methods.

Jean-Eudes Dazard1, Michael Choe1, Michael LeBlanc2, J Sunil Rao3.   

Abstract

We introduce a survival/risk bump hunting framework to build a bump hunting model with a possibly censored time-to-event type of response and to validate model estimates. First, we describe the use of adequate survival peeling criteria to build a survival/risk bump hunting model based on recursive peeling methods. Our method called "Patient Recursive Survival Peeling" is a rule-induction method that makes use of specific peeling criteria such as hazard ratio or log-rank statistics. Second, to validate our model estimates and improve survival prediction accuracy, we describe a resampling-based validation technique specifically designed for the joint task of decision rule making by recursive peeling (i.e. decision-box) and survival estimation. This alternative technique, called "combined" cross-validation is done by combining test samples over the cross-validation loops, a design allowing for bump hunting by recursive peeling in a survival setting. We provide empirical results showing the importance of cross-validation and replication.

Entities:  

Keywords:  Bump Hunting; K-Fold Cross-Validation; Non-Parametric Survival Analysis; Patient Rule-Induction Method; Survival/Risk Estimation; Survival/Risk Prediction

Year:  2014        PMID: 26997922      PMCID: PMC4795911     

Source DB:  PubMed          Journal:  Proc Am Stat Assoc        ISSN: 1543-3218


  21 in total

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2.  Relative risk trees for censored survival data.

Authors:  M LeBlanc; J Crowley
Journal:  Biometrics       Date:  1992-06       Impact factor: 2.571

3.  Adaptive risk group refinement.

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4.  Sample size planning for developing classifiers using high-dimensional DNA microarray data.

Authors:  Kevin K Dobbin; Richard M Simon
Journal:  Biostatistics       Date:  2006-04-13       Impact factor: 5.899

5.  An evaluation of resampling methods for assessment of survival risk prediction in high-dimensional settings.

Authors:  Jyothi Subramanian; Richard Simon
Journal:  Stat Med       Date:  2010-12-01       Impact factor: 2.373

6.  Exponential survival trees.

Authors:  R B Davis; J R Anderson
Journal:  Stat Med       Date:  1989-08       Impact factor: 2.373

7.  Tree-structured proportional hazards regression modeling.

Authors:  H Ahn; W Y Loh
Journal:  Biometrics       Date:  1994-06       Impact factor: 2.571

8.  Evaluating the yield of medical tests.

Authors:  F E Harrell; R M Califf; D B Pryor; K L Lee; R A Rosati
Journal:  JAMA       Date:  1982-05-14       Impact factor: 56.272

9.  Bias in error estimation when using cross-validation for model selection.

Authors:  Sudhir Varma; Richard Simon
Journal:  BMC Bioinformatics       Date:  2006-02-23       Impact factor: 3.169

10.  Criteria for the use of omics-based predictors in clinical trials: explanation and elaboration.

Authors:  Lisa M McShane; Margaret M Cavenagh; Tracy G Lively; David A Eberhard; William L Bigbee; P Mickey Williams; Jill P Mesirov; Mei-Yin C Polley; Kelly Y Kim; James V Tricoli; Jeremy M G Taylor; Deborah J Shuman; Richard M Simon; James H Doroshow; Barbara A Conley
Journal:  BMC Med       Date:  2013-10-17       Impact factor: 11.150

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  1 in total

1.  R package PRIMsrc: Bump Hunting by Patient Rule Induction Method for Survival, Regression and Classification.

Authors:  Jean-Eudes Dazard; Michael Choe; Michael LeBlanc; J Sunil Rao
Journal:  Proc Am Stat Assoc       Date:  2015-08
  1 in total

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