Literature DB >> 26997660

Transient response characteristics in a biomolecular integral controller.

Shaunak Sen1.   

Abstract

The cellular behaviour of perfect adaptation is achieved through the use of an integral control element in the underlying biomolecular circuit. It is generally unclear how integral action affects the important aspect of transient response in these biomolecular systems, especially in light of the fact that it typically deteriorates the transient response in engineering contexts. To address this issue, the authors investigated the transient response in a computational model of a simple biomolecular integral control system involved in bacterial signalling. They find that the transient response can actually speed up as the integral gain parameter increases. On further analysis, they find that the underlying dynamics are composed of slow and fast modes and the speed-up of the transient response is because of the speed-up of the slow-mode dynamics. Finally, they note how an increase in the integral gain parameter also leads to a decrease in the amplitude of the transient response, consistent with the overall improvement in the transient response. These results should be useful in understanding the overall effect of integral action on system dynamics, particularly for biomolecular systems.

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Year:  2016        PMID: 26997660      PMCID: PMC8687195          DOI: 10.1049/iet-syb.2015.0004

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  13 in total

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7.  Robustness in simple biochemical networks.

Authors:  N Barkai; S Leibler
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8.  Amplification and adaptation in regulatory and sensory systems.

Authors:  D E Koshland; A Goldbeter; J B Stock
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9.  Calcium homeostasis and parturient hypocalcemia: an integral feedback perspective.

Authors:  H El-Samad; J P Goff; M Khammash
Journal:  J Theor Biol       Date:  2002-01-07       Impact factor: 2.691

10.  Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-09       Impact factor: 11.205

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  1 in total

1.  Multi-bit Boolean model for chemotactic drift of Escherichia coli.

Authors:  Anuj Deshpande; Sibendu Samanta; Sutharsan Govindarajan; Ritwik Kumar Layek
Journal:  IET Syst Biol       Date:  2020-12       Impact factor: 1.615

  1 in total

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