Literature DB >> 26996975

Long non-coding RNA regulation of gene expression during differentiation.

Vanessa Lopez-Pajares1.   

Abstract

Transcriptome analysis of mammalian genomes has revealed widespread transcription, much of which does not encode protein. Long non-coding RNAs (lncRNAs) are a subset of the non-coding transcriptome that are emerging as critical regulators of various cellular processes. Differentiation of stem and progenitor cells requires a careful execution of specific genetic programs, and recent studies have revealed that lncRNA expression contributes to specification of cell identity. LncRNAs participate in regulating differentiation at multiple levels of gene expression through various mechanisms of action. In this review, functional roles of lncRNAs in regulating cellular differentiation of blood, muscle, skin, cardiomyocytes, adipocytes, and neurons are discussed.

Entities:  

Keywords:  Differentiation; Gene expression; LncRNAs; Stem cells; Transcription factors

Mesh:

Substances:

Year:  2016        PMID: 26996975     DOI: 10.1007/s00424-016-1809-6

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  63 in total

1.  Genome-wide identification of long noncoding RNAs in CD8+ T cells.

Authors:  Ken C Pang; Marcel E Dinger; Tim R Mercer; Lorenzo Malquori; Sean M Grimmond; Weisan Chen; John S Mattick
Journal:  J Immunol       Date:  2009-06-15       Impact factor: 5.422

2.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

Review 3.  Regulation of mammalian cell differentiation by long non-coding RNAs.

Authors:  Wenqian Hu; Juan R Alvarez-Dominguez; Harvey F Lodish
Journal:  EMBO Rep       Date:  2012-10-16       Impact factor: 8.807

4.  Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal.

Authors:  Yue Wang; Zhenyu Xu; Junfeng Jiang; Chen Xu; Jiuhong Kang; Lei Xiao; Minjuan Wu; Jun Xiong; Xiaocan Guo; Houqi Liu
Journal:  Dev Cell       Date:  2013-03-28       Impact factor: 12.270

5.  MUNC, a long noncoding RNA that facilitates the function of MyoD in skeletal myogenesis.

Authors:  Adam C Mueller; Magdalena A Cichewicz; Bijan K Dey; Ryan Layer; Brian J Reon; Jeffrey R Gagan; Anindya Dutta
Journal:  Mol Cell Biol       Date:  2014-11-17       Impact factor: 4.272

6.  Long noncoding RNA-mediated anti-apoptotic activity in murine erythroid terminal differentiation.

Authors:  Wenqian Hu; Bingbing Yuan; Johan Flygare; Harvey F Lodish
Journal:  Genes Dev       Date:  2011-12-08       Impact factor: 11.361

7.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

8.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

9.  The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse.

Authors:  Phillip Grote; Lars Wittler; David Hendrix; Frederic Koch; Sandra Währisch; Arica Beisaw; Karol Macura; Gaby Bläss; Manolis Kellis; Martin Werber; Bernhard G Herrmann
Journal:  Dev Cell       Date:  2013-01-28       Impact factor: 12.270

10.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

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  26 in total

1.  A novel long non-coding RNA, lncKBTBD10, involved in bovine skeletal muscle myogenesis.

Authors:  Mingming Chen; Xin Li; Xiaojuan Zhang; Yan Li; Junxing Zhang; Minhui Liu; Linlin Zhang; Xiangbin Ding; Xinfeng Liu; Hong Guo
Journal:  In Vitro Cell Dev Biol Anim       Date:  2018-11-21       Impact factor: 2.416

2.  LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C.

Authors:  Luca Ducoli; Saumya Agrawal; Eliane Sibler; Tsukasa Kouno; Carlotta Tacconi; Chung-Chao Hon; Simone D Berger; Daniela Müllhaupt; Yuliang He; Jihye Kim; Marco D'Addio; Lothar C Dieterich; Piero Carninci; Michiel J L de Hoon; Jay W Shin; Michael Detmar
Journal:  Nat Commun       Date:  2021-02-10       Impact factor: 14.919

3.  Long non-coding RNA FOXP4-AS1 is an unfavourable prognostic factor and regulates proliferation and apoptosis in colorectal cancer.

Authors:  Juan Li; Yifan Lian; Changsheng Yan; Zeling Cai; Jie Ding; Zhonghua Ma; Peng Peng; Keming Wang
Journal:  Cell Prolif       Date:  2016-10-27       Impact factor: 6.831

4.  Polysome-associated lncRNAs during cardiomyogenesis of hESCs.

Authors:  Isabela Tiemy Pereira; Lucia Spangenberg; Guillermo Cabrera; Bruno Dallagiovanna
Journal:  Mol Cell Biochem       Date:  2020-03-03       Impact factor: 3.396

Review 5.  Long Non-coding RNA ZFPM2-AS1: A Novel Biomarker in the Pathogenesis of Human Cancers.

Authors:  Gabriel B K Sasa; Cheng Xuan; Guoliang Lyu; Xianfeng Ding; Fang Meiyu
Journal:  Mol Biotechnol       Date:  2022-01-31       Impact factor: 2.695

6.  Association between long-chain non-coding RNA SRA1 gene single-nucleotide polymorphism and polycystic ovary syndrome susceptibility.

Authors:  Jifan Tan; XiuLan Hao; TingTing Zhao; JianLan Ying; Tian Li; Li Cheng
Journal:  J Assist Reprod Genet       Date:  2020-08-11       Impact factor: 3.412

Review 7.  Long non-coding RNAs in hepatocellular carcinoma: Potential roles and clinical implications.

Authors:  Zhao-Shan Niu; Xiao-Jun Niu; Wen-Hong Wang
Journal:  World J Gastroenterol       Date:  2017-08-28       Impact factor: 5.742

8.  Essential role of long non-coding RNAs in de novo chromatin modifications: the genomic address code hypothesis.

Authors:  Ken Nishikawa; Akira R Kinjo
Journal:  Biophys Rev       Date:  2017-03-21

Review 9.  LncRNA DDX11-AS1: a novel oncogene in human cancer.

Authors:  Yubin Feng; Maomao Wu; Shuang Hu; Xiaoqing Peng; Feihu Chen
Journal:  Hum Cell       Date:  2020-08-09       Impact factor: 4.174

10.  Non-Coding RNAs As Transcriptional Regulators In Eukaryotes.

Authors:  O Y Burenina; T S Oretskaya; E A Kubareva
Journal:  Acta Naturae       Date:  2017 Oct-Dec       Impact factor: 1.845

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