Literature DB >> 26990401

Kinetic Isotope Effect Provides Insight into the Vibrational Relaxation Mechanism of Aromatic Molecules: Application to Cyano-phenylalanine.

Jeffrey M Rodgers, Wenkai Zhang, Christopher G Bazewicz1, Jianxin Chen, Scott H Brewer1, Feng Gai.   

Abstract

Varying the reduced mass of an oscillator via isotopic substitution provides a convenient means to alter its vibrational frequency and hence has found wide applications. Herein, we show that this method can also help delineate the vibrational relaxation mechanism, using four isotopomers of the unnatural amino acid p-cyano-phenylalanine (Phe-CN) as models. In water, the nitrile stretching frequencies of these isotopomers, Phe-(12)C(14)N (1), Phe-(12)C(15)N (2), Phe-(13)C(14)N (3), and Phe-(13)C(15)N (4), are found to be equally separated by ∼27 cm(-1), whereas their vibrational lifetimes are determined to be 4.0 ± 0.2 (1), 2.2 ± 0.1 (2), 3.4 ± 0.2 (3), and 7.9 ± 0.5 ps (4), respectively. We find that an empirical relationship that considers the effective reduced mass of CN can accurately account for the observed frequency gaps, while the vibrational lifetime distribution, which suggests an intramolecular relaxation mechanism, can be rationalized by the order-specific density of states near the CN stretching frequency.

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Year:  2016        PMID: 26990401      PMCID: PMC4824650          DOI: 10.1021/acs.jpclett.6b00325

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  39 in total

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Authors:  Prabuddha Mukherjee; Amber T Krummel; Eric C Fulmer; Itamar Kass; Isaiah T Arkin; Martin T Zanni
Journal:  J Chem Phys       Date:  2004-06-01       Impact factor: 3.488

2.  Vibrational energy flow and chemical reactions.

Authors:  M Gruebele; P G Wolynes
Journal:  Acc Chem Res       Date:  2004-04       Impact factor: 22.384

3.  Nature of vibrational coupling in helical peptides: an isotopic labeling study.

Authors:  Rong Huang; Jan Kubelka; Wendy Barber-Armstrong; R A G D Silva; Sean M Decatur; Timothy A Keiderling
Journal:  J Am Chem Soc       Date:  2004-03-03       Impact factor: 15.419

4.  Vibrational energy relaxation in proteins.

Authors:  Hiroshi Fujisaki; John E Straub
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

5.  Connecting chemical dynamics in gases and liquids.

Authors:  Christopher G Elles; F Fleming Crim
Journal:  Annu Rev Phys Chem       Date:  2006       Impact factor: 12.703

6.  Vibrational spectral diffusion of azide in water.

Authors:  Shuzhou Li; J R Schmidt; A Piryatinski; C P Lawrence; J L Skinner
Journal:  J Phys Chem B       Date:  2006-09-28       Impact factor: 2.991

7.  Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations.

Authors:  Adam W Smith; Joshua Lessing; Ziad Ganim; Chunte Sam Peng; Andrei Tokmakoff; Santanu Roy; Thomas L C Jansen; Jasper Knoester
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

8.  Using nitrile-derivatized amino acids as infrared probes of local environment.

Authors:  Zelleka Getahun; Cheng-Yen Huang; Ting Wang; Brenda De León; William F DeGrado; Feng Gai
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

9.  How Sensitive is the Amide I Vibration of the Polypeptide Backbone to Electric Fields?

Authors:  Kwang-Im Oh; Giacomo Fiorin; Feng Gai
Journal:  Chemphyschem       Date:  2015-10-12       Impact factor: 3.102

10.  Site-specific orientation of an α-helical peptide ovispirin-1 from isotope-labeled SFG spectroscopy.

Authors:  Bei Ding; Jennifer E Laaser; Yuwei Liu; Pengrui Wang; Martin T Zanni; Zhan Chen
Journal:  J Phys Chem B       Date:  2013-11-14       Impact factor: 2.991

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  5 in total

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Journal:  J Chem Phys       Date:  2021-07-28       Impact factor: 3.488

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Authors:  Sashary Ramos; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-03-21       Impact factor: 2.991

3.  Extended timescale 2D IR probes of proteins: p-cyanoselenophenylalanine.

Authors:  S Ramos; K J Scott; R E Horness; A L Le Sueur; M C Thielges
Journal:  Phys Chem Chem Phys       Date:  2017-04-12       Impact factor: 3.676

4.  Extending the vibrational lifetime of azides with heavy atoms.

Authors:  Farzaneh Chalyavi; Andrew J Schmitz; Natalie R Fetto; Matthew J Tucker; Scott H Brewer; Edward E Fenlon
Journal:  Phys Chem Chem Phys       Date:  2020-08-24       Impact factor: 3.676

5.  Versatile Vibrational Energy Sensors for Proteins.

Authors:  Jan G Löffler; Erhan Deniz; Carolin Feid; Valentin G Franz; Jens Bredenbeck
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-06       Impact factor: 16.823

  5 in total

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