| Literature DB >> 26988277 |
Yunfeng Ruan1, Jie Jiang1, Liang Guo2, Yan Li3, Hailiang Huang4,5, Lu Shen1, Mengqi Luan1, Mo Li1, Huihui Du1, Cheng Ma1, Lin He1, Xiaoqing Zhang6, Shengying Qin1,7.
Abstract
Epidermal growth factor receptor (EGFR) Tyrosine kinase inhibitor (TKI) is an effective targeted therapy for advanced non-small cell lung cancer (NSCLC) but also causes adverse drug reactions (ADRs) e.g., skin rash and diarrhea. SNPs in the EGFR signal pathway, drug metabolism/ transport pathways and miRNA might contribute to the interpersonal difference in ADRs but biomarkers for therapeutic responses and ADRs to TKIs in Chinese population are yet to be fully investigated. We recruited 226 Chinese advanced NSCLC patients who received TKIs erlotinib, gefitinib and icotinib hydrochloride and systematically studied the genetic factors associated with therapeutic responses and ADRs. Rs884225 (T > C) in EGFR 3' UTR was significantly associated with lower risk of ADRs to erlotinib (p value = 0.0010, adjusted p value = 0.042). A multivariant interaction four-SNP model (rs884225 in EGFR 3'UTR, rs7787082 in ABCB1 intron, rs38845 in MET intron and rs3803300 in AKT1 5'UTR) was associated with ADRs in general and the more specific drug induced skin injury. The SNPs associated with both therapeutic responses and ADRs indicates they might share a common genetic basis. Our study provided potential biomarkers and clues for further research of biomarkers for therapeutic responses and ADRs in Chinese NSCLC patients.Entities:
Mesh:
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Year: 2016 PMID: 26988277 PMCID: PMC4796893 DOI: 10.1038/srep23368
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
The characteristics of the patients.
SD: standard deviation; No. : the number of.
The correlation of therapeutic responses and ADRs among patients.
| erlotinib | PFS | — | 0.766** | — |
| ADR | 0.559** | 0.540** | — | |
| skin injury | 0.559** | 0.540** | — | |
| digestive tract injury | 0.533** | 0.438** | 0.584** | |
| geftinat | PFS | — | 0.676** | — |
| ADR | 0.390** | 0.545** | — | |
| skin injury | 0.415** | 0.573** | — | |
| digestive tract injury | 0.223 | 0.404** | 0.462** | |
| icotinib hydrachloride | PFS | — | 0.801** | — |
| ADR | 0.120 | 0.172 | — | |
| skin injury | 0.325* | 0.376* | — | |
| digestive tract injury | 0.110 | 0.062 | 0.555** |
*p < 0.05,
**p < 0.01.
Figure 1The SNPs associated with therapeutic responses and ADRs.
SNP sites associated with therapeutic responses and ADRs.
| Classification | Gene | SNP | P value | phenotype | Genotype number(frequency) | HWE p value | ||
|---|---|---|---|---|---|---|---|---|
| objective response to drug | EGFR | rs884225 | 0.0226 | T T | T C | C C | ||
| positive | 20(0.333) | 31(0.517) | 9(0.150) | 0.5916 | ||||
| negative | 29(0.175) | 94(0.566) | 43(0.259) | 0.0700 | ||||
| ABCG2 | rs2231142 | 0.0828 | A A | A C | C C | |||
| positive | 8(0.138) | 32(0.552) | 18(0.310) | 0.2959 | ||||
| negative | 11(0.067) | 79(0.482) | 74(0.451) | 0.0955 | ||||
| C C | C T | T T | ||||||
| objective response to erlotinib | CYP2C9 | rs17885098 | 0.0191 | positive | 2(0.062) | 5(0.156) | 25(0.781) | 0.0456 |
| negative | 0(0.000) | 9(0.088) | 93(0.912) | 0.6411 | ||||
| A A | A G | G G | ||||||
| CYP2C19 | rs4986893 | 0.0332 | positive | 1(0.031) | 5(0.156) | 26(0.812) | 0.2628 | |
| negative | 0(0.000) | 5(0.052) | 91(0.948) | 0.7934 | ||||
| A A | A G | G G | ||||||
| AKT1 | rs1130233 | 0.0433 | positive | 2(0.100) | 15(0.750) | 3(0.150) | 0.0243 | |
| negative | 14(0.326) | 18(0.419) | 11(0.256) | 0.2981 | ||||
| C C | C T | C T | ||||||
| positive | — | 2(0.100) | 18(0.900) | 0.8139 | ||||
| miRNA | rs111718468 | 0.0373 | negative | — | 0(0.000) | 42(1.000) | 1.0000 | |
| T T | T C | C C | ||||||
| ADR to TKIs | EGFR | rs884225 | 0.0018 | positive | 23(0.377) | 27(0.443) | 11(0.180) | 0.5367 |
| negative | 26(0.158) | 98(0.594) | 41(0.248) | 0.0111 | ||||
| C C | C T | T T | ||||||
| ABCB1 | rs1045642 | 0.0462 | positive | 28(0.459) | 25(0.410) | 8(0.131) | 0.5239 | |
| negative | 47(0.285) | 92(0.558) | 26(0.158) | 0.0864 | ||||
| A A | A G | G G | ||||||
| ABCB1 | rs10248420 | 0.0434 | positive | 16(0.271) | 30(0.508) | 13(0.220) | 0.8804 | |
| negative | 62(0.403) | 76(0.494) | 16(0.104) | 0.2990 | ||||
| C C | C T | T T | ||||||
| ADR to erlotinib | ABCB1 | rs1128503 | 0.0344 | positive | 4(0.129) | 20(0.645) | 7(0.226) | 0.0922 |
| negative | 12(0.115) | 42(0.404) | 50(0.481) | 0.4889 | ||||
| T T | T C | C C | ||||||
| EGFR | rs884225 | positive | 15(0.484) | 10(0.323) | 6(0.194) | 0.1000 | ||
| negative | 17(0.163) | 60(0.577) | 27(0.260) | 0.0933 | ||||
| A A | A G | G G | ||||||
| ABCB1 | rs7787082 | 0.0356 | positive | 10(0.323) | 11(0.355) | 10(0.323) | 0.1061 | |
| negative | 13(0.125) | 51(0.490) | 40(0.385) | 0.5984 | ||||
| A A | A C | C C | ||||||
| CYP1A2 | rs762551 | 0.0126 | positive | 7(0.233) | 20(0.667) | 3(0.100) | 0.0503 | |
| negative | 50(0.510) | 36(0.367) | 12(0.122) | 0.1805 | ||||
| A A | A G | G G | ||||||
| ABCB1 | rs10248420 | 0.0474 | positive | 8(0.267) | 14(0.467) | 8(0.267) | 0.7150 | |
| negative | 37(0.385) | 50(0.521) | 9(0.094) | 0.1748 | ||||
| ADR to gefitinib | CYP1A1 | rs1048943 | 0.1076 | C C | C T | T T | ||
| positive | 3(0.130) | 10(0.435) | 10(0.435) | 0.8416 | ||||
| negative | 1(0.026) | 12(0.308) | 26(0.667) | 0.7804 | ||||
| skin injury induced by TKIs | EGFR | rs884225 | 0.0073 | T T | T C | C C | ||
| positive | 20(0.370) | 24(0.444) | 10(0.185) | 0.5589 | ||||
| negative | 29(0.169) | 101(0.587) | 42(0.244) | 0.0175 | ||||
| T T | T C | C C | ||||||
| skin injury induced by erlotinib | EGFR | rs884225 | 0.0033 | positive | 14(0.467) | 10(0.333) | 6(0.200) | 0.1221 |
| negative | 18(0.171) | 60(0.571) | 27(0.257) | 0.1211 | ||||
| C C | C T | T T | ||||||
| CYP2C9 | rs17885098 | 0.0222 | positive | 2(0.067) | 4(0.133) | 24(0.800) | 0.0205 | |
| negative | 0(0.000) | 10(0.095) | 95(0.905) | 0.6084 | ||||
| C C | C T | T T | ||||||
| ABCB1 | rs1128503 | 0.0305 | positive | 3(0.100) | 20(0.667) | 7(0.233) | 0.0503 | |
| negative | 13(0.124) | 42(0.400) | 50(0.476) | 0.3750 | ||||
| A A | A C | C C | ||||||
| CYP1A2 | rs762551 | 0.0058 | positive | 6(0.207) | 20(0.690) | 3(0.103) | 0.0338 | |
| negative | 51(0.515) | 36(0.364) | 12(0.121) | 0.1663 | ||||
| A A | A G | G G | ||||||
| CYP2C19 | rs4986893 | 0.0113 | positive | 1(0.036) | 5(0.179) | 22(0.786) | 0.3311 | |
| negative | 0(0.000) | 5(0.050) | 96(0.950) | 0.7987 | ||||
| A A | A G | G G | ||||||
| digestive tract injury induced by TKIs | CYP1A2 | rs2069521 | 0.0366 | positive | 1(0.033) | 3(0.100) | 26(0.867) | 0.0585 |
| negative | 0(0.000) | 24(0.123) | 171(0.877) | 0.3599 | ||||
| C C | C T | T T | ||||||
| CYP1A2 | rs4646425 | 0.0361 | positive | 26(0.867) | 3(0.100) | 1(0.033) | 0.0585 | |
| negative | 172(0.878) | 24(0.122) | 0(0.000) | 0.3613 | ||||
| C C | C T | C T | ||||||
| miRNA | rs111718468 | 0.0407 | positive | — | 3(0.100) | 27(0.900) | 0.7731 | |
| negative | — | 5(0.026) | 190(0.974) | 0.8561 | ||||
Haplotypes associated with ADRs.
| Phenotype | Haplotype | Case freq. % | Control freq. % | Fisher’s p value | adjusted p value | Odds Ratio [95%CI] |
|---|---|---|---|---|---|---|
| ADRs to TKIs | ABCB1: C A G | 41.4 | 31.5 | 0.046992 | 0.23496 | 1.562 [1.004~2.429] |
| ABCB1: T G A | 31.4 | 42.4 | 0.041685 | 0.208425 | 0.626 [0.398~0.984] | |
| Skin injury induced by TKIs | CYP3A5, CYP3A4: C A A C T | 4.6 | 1.2 | 0.034768 | 0.17384 | 3.816 [1.009~14.436] |
| AKT: C G | 23.8 | 15.2 | 0.03813 | 0.11439 | 1.755 [1.027~2.999] | |
| ADRs to erlotinib | CYP3A5, CYP3A4: C G T C C | 4.8 | 0.8 | 0.033093 | 0.198558 | 6.511 [0.911~46.559] |
| Skin injury induced by erlotinib | CYP3A5, CYP3A4: C G T C C | 5.0 | 0.8 | 0.027835 | 0.16701 | 6.835 [0.955~48.917] |
Multivariant interaction of ADRs and skin injury to TKIs.
| P value | CVC | Bal. Acc. CV Training | Bal. Acc. CV Testing | Bal. Acc. Model Training | Bal. Acc. Model Testing | Bal. Acc. Overall | |
|---|---|---|---|---|---|---|---|
| 0.021 | 9/10 | 0.8522 | 0.6343 | 0.852 | 0.6586 | 0.8472 | |
| 0.032 | 9/10 | 0.835 | 0.6257 | 0.8349 | 0.6676 | 0.8296 |
CVC: cross-validation consistency.