Literature DB >> 26985653

Antisense non-coding RNAs and regulation of gene transcription.

Manuel Beltran1, Antonio García de Herreros2,3.   

Abstract

Transcriptome analyses have revealed the existence of a large variety of non-coding RNAs (ncRNAs) that, although specifically expressed, are largely unknown in function. The best-studied role of ncRNAs is the regulation of gene expression, mostly participating in transcription. We report here the role of an antisense ncRNA that represses transcription of LEF1 by recruiting Polycomb repressive complex 2 (PRC2), which trimethylates H3K27. This antisense LEF1 transcript undergoes splicing losing its inhibitory function. We also discuss the possible general relevance of this finding.

Entities:  

Keywords:  antisense transcription; Epithelial-to-Mesenchymal transition; LEF1 gene; Polycomb repressive complex 2

Mesh:

Substances:

Year:  2016        PMID: 26985653      PMCID: PMC4853042          DOI: 10.1080/21541264.2016.1148804

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  29 in total

1.  Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.

Authors:  John L Rinn; Michael Kertesz; Jordon K Wang; Sharon L Squazzo; Xiao Xu; Samantha A Brugmann; L Henry Goodnough; Jill A Helms; Peggy J Farnham; Eran Segal; Howard Y Chang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

Review 2.  Long non-coding RNAs: insights into functions.

Authors:  Tim R Mercer; Marcel E Dinger; John S Mattick
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

3.  A model for transmission of the H3K27me3 epigenetic mark.

Authors:  Klaus H Hansen; Adrian P Bracken; Diego Pasini; Nikolaj Dietrich; Simmi S Gehani; Astrid Monrad; Juri Rappsilber; Mads Lerdrup; Kristian Helin
Journal:  Nat Cell Biol       Date:  2008-10-19       Impact factor: 28.824

4.  The SNAG domain of Snail1 functions as a molecular hook for recruiting lysine-specific demethylase 1.

Authors:  Yiwei Lin; Yadi Wu; Junlin Li; Chenfang Dong; Xiaofeng Ye; Young-In Chi; B Mark Evers; Binhua P Zhou
Journal:  EMBO J       Date:  2010-04-13       Impact factor: 11.598

5.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.

Authors:  Mitchell Guttman; Ido Amit; Manuel Garber; Courtney French; Michael F Lin; David Feldser; Maite Huarte; Or Zuk; Bryce W Carey; John P Cassady; Moran N Cabili; Rudolf Jaenisch; Tarjei S Mikkelsen; Tyler Jacks; Nir Hacohen; Bradley E Bernstein; Manolis Kellis; Aviv Regev; John L Rinn; Eric S Lander
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

6.  A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition.

Authors:  Manuel Beltran; Isabel Puig; Cristina Peña; José Miguel García; Ana Belén Alvarez; Raúl Peña; Félix Bonilla; Antonio García de Herreros
Journal:  Genes Dev       Date:  2008-03-15       Impact factor: 11.361

7.  Polycomb complex 2 is required for E-cadherin repression by the Snail1 transcription factor.

Authors:  Nicolás Herranz; Diego Pasini; Víctor M Díaz; Clara Francí; Arantxa Gutierrez; Natàlia Dave; Maria Escrivà; Inma Hernandez-Muñoz; Luciano Di Croce; Kristian Helin; Antonio García de Herreros; Sandra Peiró
Journal:  Mol Cell Biol       Date:  2008-06-02       Impact factor: 4.272

8.  Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.

Authors:  Jing Zhao; Bryan K Sun; Jennifer A Erwin; Ji-Joon Song; Jeannie T Lee
Journal:  Science       Date:  2008-10-31       Impact factor: 47.728

Review 9.  The recruitment of chromatin modifiers by long noncoding RNAs: lessons from PRC2.

Authors:  Chen Davidovich; Thomas R Cech
Journal:  RNA       Date:  2015-12       Impact factor: 4.942

10.  Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.

Authors:  Manching Ku; Richard P Koche; Esther Rheinbay; Eric M Mendenhall; Mitsuhiro Endoh; Tarjei S Mikkelsen; Aviva Presser; Chad Nusbaum; Xiaohui Xie; Andrew S Chi; Mazhar Adli; Simon Kasif; Leon M Ptaszek; Chad A Cowan; Eric S Lander; Haruhiko Koseki; Bradley E Bernstein
Journal:  PLoS Genet       Date:  2008-10-31       Impact factor: 5.917

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1.  Mining GWAS and eQTL data for CF lung disease modifiers by gene expression imputation.

Authors:  Hong Dang; Deepika Polineni; Rhonda G Pace; Jaclyn R Stonebraker; Harriet Corvol; Garry R Cutting; Mitchell L Drumm; Lisa J Strug; Wanda K O'Neal; Michael R Knowles
Journal:  PLoS One       Date:  2020-11-30       Impact factor: 3.240

Review 2.  DNA Double-Strand Breaks as Pathogenic Lesions in Neurological Disorders.

Authors:  Vincent E Provasek; Joy Mitra; Vikas H Malojirao; Muralidhar L Hegde
Journal:  Int J Mol Sci       Date:  2022-04-22       Impact factor: 6.208

Review 3.  Chemical Tools for Dissecting the Role of lncRNAs in Epigenetic Regulation.

Authors:  Sarah Nainar; Chao Feng; Robert C Spitale
Journal:  ACS Chem Biol       Date:  2016-06-27       Impact factor: 5.100

4.  A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences.

Authors:  Timothy E Schlub; Jan P Buchmann; Edward C Holmes
Journal:  Mol Biol Evol       Date:  2018-10-01       Impact factor: 16.240

Review 5.  Insights into the Functions of LncRNAs in Drosophila.

Authors:  Keqin Li; Yuanliangzi Tian; Ya Yuan; Xiaolan Fan; Mingyao Yang; Zhi He; Deying Yang
Journal:  Int J Mol Sci       Date:  2019-09-19       Impact factor: 5.923

6.  Autoregulation of JARID2 through PRC2 interaction with its antisense ncRNA.

Authors:  Diaa Al-Raawi; Aditi Kanhere
Journal:  BMC Res Notes       Date:  2020-10-30
  6 in total

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