Literature DB >> 26984618

Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops.

Nathan S Watson-Haigh1, Jerico Revote2, Radoslaw Suchecki1, Sonika Tyagi3, Susan M Corley4, Catherine A Shang5, Annette McGrath6.   

Abstract

There is a clear demand for hands-on bioinformatics training. The development of bioinformatics workshop content is both time-consuming and expensive. Therefore, enabling trainers to develop bioinformatics workshops in a way that facilitates reuse is becoming increasingly important. The most widespread practice for sharing workshop content is through making PDF, PowerPoint and Word documents available online. While this effort is to be commended, such content is usually not so easy to reuse or repurpose and does not capture all the information required for a third party to rerun a workshop. We present an open, collaborative framework for developing and maintaining, reusable and shareable hands-on training workshop content.
© The Author 2016. Published by Oxford University Press.

Entities:  

Keywords:  bioinformatics; training; workshop; reusable; collaborative; open access

Mesh:

Year:  2017        PMID: 26984618      PMCID: PMC5444239          DOI: 10.1093/bib/bbw013

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  4 in total

1.  Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia.

Authors:  Nathan S Watson-Haigh; Catherine A Shang; Matthias Haimel; Myrto Kostadima; Remco Loos; Nandan Deshpande; Konsta Duesing; Xi Li; Annette McGrath; Sean McWilliam; Simon Michnowicz; Paula Moolhuijzen; Steve Quenette; Jerico Nico De Leon Revote; Sonika Tyagi; Maria V Schneider
Journal:  Brief Bioinform       Date:  2013-03-29       Impact factor: 11.622

2.  Ten simple rules for developing a short bioinformatics training course.

Authors:  Allegra Via; Javier De Las Rivas; Teresa K Attwood; David Landsman; Michelle D Brazas; Jack A M Leunissen; Anna Tramontano; Maria Victoria Schneider
Journal:  PLoS Comput Biol       Date:  2011-10-27       Impact factor: 4.475

3.  The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Authors:  Manuel Corpas; Rafael C Jimenez; Erik Bongcam-Rudloff; Aidan Budd; Michelle D Brazas; Pedro L Fernandes; Bruno Gaeta; Celia van Gelder; Eija Korpelainen; Fran Lewitter; Annette McGrath; Daniel MacLean; Patricia M Palagi; Kristian Rother; Jan Taylor; Allegra Via; Mick Watson; Maria Victoria Schneider; Teresa K Attwood
Journal:  Bioinformatics       Date:  2014-09-04       Impact factor: 6.937

4.  Development of a cloud-based Bioinformatics Training Platform.

Authors:  Jerico Revote; Nathan S Watson-Haigh; Steve Quenette; Blair Bethwaite; Annette McGrath; Catherine A Shang
Journal:  Brief Bioinform       Date:  2017-05-01       Impact factor: 11.622

  4 in total
  4 in total

1.  Development of a cloud-based Bioinformatics Training Platform.

Authors:  Jerico Revote; Nathan S Watson-Haigh; Steve Quenette; Blair Bethwaite; Annette McGrath; Catherine A Shang
Journal:  Brief Bioinform       Date:  2017-05-01       Impact factor: 11.622

2.  From trainees to trainers to instructors: Sustainably building a national capacity in bioinformatics training.

Authors:  Annette McGrath; Katherine Champ; Catherine A Shang; Ellen van Dam; Cath Brooksbank; Sarah L Morgan
Journal:  PLoS Comput Biol       Date:  2019-06-27       Impact factor: 4.475

3.  Application of a bioinformatics training delivery method for reaching dispersed and distant trainees.

Authors:  Christina R Hall; Philippa C Griffin; Andrew J Lonie; Jeffrey H Christiansen
Journal:  PLoS Comput Biol       Date:  2021-03-18       Impact factor: 4.475

4.  A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning.

Authors:  Allegra Via; Teresa K Attwood; Pedro L Fernandes; Sarah L Morgan; Maria Victoria Schneider; Patricia M Palagi; Gabriella Rustici; Rochelle E Tractenberg
Journal:  Brief Bioinform       Date:  2019-03-22       Impact factor: 11.622

  4 in total

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