| Literature DB >> 26981150 |
Fatimah Ali Al-Zahrani1, Muhammad Nadeem Arshad2, Abdullah M Asiri2, Tariq Mahmood3, Mazhar Amjad Gilani4, Reda M El-Shishtawy1.
Abstract
BACKGROUND: Donor acceptor moieties connected through π-conjugated bridges i.e. D-π-A, in order to facilitate the electron/charge transfer phenomenon, have wide range of applications. Many classes of organic compounds, such as cyanine, coumarin carbazole, indoline, perylene, phenothiazine, triphenylamine, tetrahydroquinoline and pyrrole can act as charge transfer materials. Phenothiazines have been extensively studied as electron donor candidates due to their potential applications as electrochemical, photovoltaic, photo-physical and DSSC materials.Entities:
Keywords: DFT; MEP; NBO; NLO; Phenothiazine; X-ray
Year: 2016 PMID: 26981150 PMCID: PMC4791767 DOI: 10.1186/s13065-016-0158-z
Source DB: PubMed Journal: Chem Cent J ISSN: 1752-153X Impact factor: 4.215
Fig. 1General synthetic scheme of title compounds 3a and 3b. (i) 1-Bromohexane (Compound 3a), 1-Bromooctane (Compound 3b), KOH, KI, DMSO; (ii) DMF, POCl3, 0 °C; (iii) Malonitrile, Piperidine, EtOH
Crystal data and structure refinement parameters of 3a and 3b
| Identification code | 3a | 3b |
|---|---|---|
| Empirical formula | C22H21N3S | C24H25N3S |
| Formula weight | 359.48 | 387.53 |
| Temperature/K | 296.15 | 296.15 |
| Crystal system | Monoclinic | Triclinic |
| Space group | P21/a | P-1 |
| a/Å | 8.3072 (11) | 16.4823 (7) |
| b/Å | 13.5441 (19) | 16.9423 (8) |
| c/Å | 17.410 (2) | 17.6368 (7) |
| α/° | 90 | 106.027 (4) |
| β/° | 92.275 (12) | 110.499 (4) |
| γ/° | 90 | 96.744 (4) |
| Volume/Å3 | 1957.3 (4) | 4306.6 (3) |
| Z | 4 | 8 |
| Wave length Å | 0.71073 | 0.71073 |
| Diffraction radiation type | MoKα | MoKα |
| ρcalcmg/mm3 | 1.220 | 1.195 |
| µ/mm−1 | 0.175 | 0.164 |
| F (000) | 760.0 | 1648.0 |
| Crystal size/mm3 | 0.340 × 0.140 × 0.060 | 0.41 × 0.13 × 0.11 |
| 2θ range for data collection | 5.756 to 59.036° | 5.7 to 59.02° |
| Index ranges | −8 ≤ h ≤ 10, −17 ≤ k ≤ 17, −21 ≤ l ≤ 22 | −21 ≤ h ≤ 22, −21 ≤ k ≤ 23, −23 ≤ l ≤ 24 |
| Reflections collected | 11,893 | 53,398 |
| Independent reflections | 4728 [R (int) = 0.0988] | 20,881 [R (int) = 0.0574] |
| Data/restraints/parameters | 4728/0/236 | 20,881/0/1013 |
| Goodness-of-fit on F2 | 0.837 | 1.016 |
| Final R indexes [I >=2σ (I)] | R1 = 0.0659, wR2 = 0.1162 | R1 = 0.0752, wR2 = 0.1475 |
| Final R indexes [all data] | R1 = 0.2559, wR2 = 0.1809 | R1 = 0.2263, wR2 = 0.2183 |
| Largest diff. peak/hole/e Å−3 | 0.18/−0.20 | 0.36/−0.29 |
Fig. 2ORTEP diagram of 3a, and 3b containing four molecules (A, B, C and D) in an asymmetric unit, thermal ellipsoids were drawn at 50 % probability level
Fig. 3Optimized geometries of 3a, 3b at B3LYP/6-31G (d, p)
Fig. 4Experimental and simulated vibrational spectra of 3a and 3b
Experimental and simulated vibrational (cm−1) values of 3a and 3b
| 3a Calc. (intensity) | 3a (Exp.) | Assignment | 3b Calc. (intensity) | 3b (Exp.) | Assignment |
|---|---|---|---|---|---|
| 3086 (11.6) | – | υsCHarom. | 3085 (13.1) | 2916 | υsCHarom. |
| 3077 (21.9) | 2916 | υas, υsCHarom. | 3077 (21.2) | – | υasCHarom. |
| 3001 (22.6) | – | υasCH2 | 3005 (21.2) | – | υasCH2 |
| 2986 (46.1) | – | υasMe | 2982 (42.8) | – | υasMe |
| 2980 (40.6) | – | υasMe | 2976 (59.1) | – | υasMe,υsCH2 |
| 2965 (16.9) | – | υasCH2 | |||
| 2966 (17.0) | – | υasCH2 | 2954 (58.4) | 2848 | υasCH2 |
| 2954 (58.6) | 2848 | υasCH2 | 2945 (69.5) | – | υasCH2 |
| 2936 (24.8) | – | υasCH2 | 2923 (32.5) | – | υasCH2 |
| 2926 (31.5) | – | υsCH2, υasCH2 | 2911 (35.6) | – | υsMe |
| 2914 (21.4) | – | υsMe | 2899 (80.5) | – | υsCH2 |
| 2898 (43.2) | – | υsCH2, υasCH2 | 2893 (62.3) | – | υsCH |
| 2895 (48.8) | – | υsCH2 | 2245 (119.0) | 2215 | υsC≡N |
| 2245 (119.1) | 2214 | υsC≡N | 2231 (13.9) | – | υasC≡N |
| 2230 (13.8) | – | υasC≡N | 1594 (64.5) | 1570 | υsC=Carom. |
| 1603 (63.5) | 1574 | υsC=Carom. | 1553 (579.0) | 1559 | υsC=Caliphatic |
| 1568 (10.9) | – | υsC=Carom. | 1526 (18.4) | – | υasC=Carom. |
| 1553 (578.2) | 1559 | υsC=Caliphatic | 1483 (61.2) | 1461 | υsC–N–C |
| 1526 (19.5) | – | υasC=Carom. | ρCH2 | ||
| 1483 (61.4) | 1472 | υsC–N–C | 1453 (112.5) | – | ρCH2 |
| 1456 (13.2) | – | ρCH2 | 1448 (189.8) | – | ρCH2 |
| 1453 (70.8) | – | ρCH2 | 1428 (41.4) | – | δCHarom. |
| 1448 (217.5) | 1458 | υasC=Carom. | 1395 (230.2) | 1405 | υasC=Carom. |
| 1428 (42.2) | – | βCHarom. | 1352 (23.2) | – | βCH |
| 1395 (233.7) | 1402 | υasC=Carom. | 1337 (206.7) | 1364 | υsN–Ph, |
| 1352 (21.6) | – | βCH | βCH2 | ||
| 1338 (189.1) | 1360 | υsN–C, γCH2 | 1311 (24.2) | 1323 | βCH2, ωCH2 |
| 1337 (23.4) | – | βCH2 | 1303 (34.0) | – | βCH2, ωCH2 |
| 1312 (28.6) | – | βCH2 | 1294 (14.0) | – | υasC=Carom. |
| 1300 (53.9) | – | βCH2 | 1290 (20.0) | – | ωCH2 |
| 1286 (98.9) | – | βCH2 | 1287 (87.5) | – | ωCH2 |
| 1279 (41.5) | – | υsN–Ph | 1279 (31.9) | – | υs CH2–N–Ph |
| 1275 (27.8) | – | βCH2 | 1276 (39.2) | – | βCH2 |
| 1238 (97.0) | – | βCHarom. | 1238 (104.4) | 1220 | βCH2, υs |
| 1232 (90.2) | – | βCHarom. | CH2–N–Ph | ||
| 1208 (138.7) | 1218 | βCHarom. | βCHarom. | ||
| 1206 (67.4) | – | βCH2 | 1233 (63.2) | – | υs CH2–N–Ph |
| 1180 (22.7) | – | ωCH2 | 1212 (38.8) | – | γCH2 |
| 1163 (120.0) | – | γCHarom. | 1207 (168.5) | – | υsC–C=CH |
| 1198 (27.7) | – | ωCH2 | |||
| 1133 (22.7) | – | υsC–CN | 1163 (121.8) | – | βCHarom. |
| 1127 (23.4) | – | ωCH2 | 1133 (23.1) | υasC–CN | |
| 1119 (13.3) | – | βCHarom. | 1128 (24.0) | – | τCH2 |
| 1081 (15.0) | – | υsC–S–C | 1119 (13.1) | – | βCHarom. |
| 927 (10.9) | – | γCH | 1083 (19.3) | – | υsN–CH2 |
| 810 (22.3) | 805 | γCHarom. | 927 (10.6) | 930 | γCH |
| 741 (26.2) | 740 | γPh | 808 (22.6) | 814 | γCHarom. |
| 735 (27.2) | – | γCHarom. | 742 (10.3) | – | γCHarom. |
| 710 (17.5) | – | γPh | 740 (15.2) | 740 | γCHarom. |
| 636 (12.4) | 607 | γC=C–CN | γCH2 | ||
| 429 (15.0) | – | γPh | 734 (39.0) | – | γCHarom. |
| βPh | |||||
| 709 (12.2) | – | γPh | |||
| 588 (12.4) | – | γC=C–CN | |||
| 616 (10.0) | 608 | γPh | |||
| 429 (15.5) | γPh |
Scaling factor used 0.958 for vibrations between 3200 and 1700 cm−1 and 0.9627 used below 1700 cm−1. Only those simulated values are given, those have shown intensity above 10
υ symmetric streching, υ asymmetric streching, β ın plane bending, γ out of plane bending, τ twisting, ρ scissoring, ω wagging
Comparison of experimental and simulated 1H-NMR of 3a and 3b (ppm) in CDCl3
| Proton (3a) | Exp. | Calc. (B3LYP) | Proton (3b) | Exp. | Calc. (B3LYP) |
|---|---|---|---|---|---|
| H14 (aromatic) | 6.84 | 8.88 | H14 (aromatic) | 6.84 | 8.93 |
| H21 (aliphatic) | 7.47 | 7.68 | H21 (aliphatic) | 7.47 | 7.75 |
| H17 (aromatic) | 7.17 | 7.47 | H17 (aromatic) | 7.17 | 7.54 |
| H19 (aromatic) | 7.08 | 7.39 | H16 (aromatic) | 7.47 | 7.53 |
| H18 (aromatic) | 6.98 | 7.29 | H19 (aromatic) | 7.08 | 7.34 |
| H16 (aromatic) | 7.53 | 7.38 | H18 (aromatic) | 6.98 | 7.29 |
| H15 (aromatic) | 6.88 | 7.22 | H15 (aromatic) | 6.88 | 7.18 |
| H10 (aromatic) | 7.74 | 7.18 | H10 (aromatic) | 7.74 | 7.16 |
| H26 (CH2) | 3.87 | 4.24 | H26 (CH2) | 3.87 | 4.22 |
| H27 (CH2) | 3.87 | 3.77 | H27 (CH2) | 3.87 | 3.85 |
| H29 (CH2) | 1.81 | 2.04 | H29 (CH2) | 1.81 | 1.88 |
| H32 (CH2) | 1.81 | 1.87 | H32 (CH2) | 1.44 | 1.87 |
| H35 (CH2) | 1.44 | 1.94 | H35 (CH2) | 1.3 | 1.97 |
| H39 (CH2) | 1.32 | 1.67 | H30 (CH2) | 1.81 | 1.68 |
| H30 (CH2) | 1.81 | 1.61 | H39 (CH2) | 1.3 | 1.59 |
| H38 (CH2) | 1.32 | 1.23 | H41 (CH2) | 1.3 | 1.48 |
| H36 (CH2) | 1.44 | 1.11 | H48 (CH2) | 1.3 | 1.3 |
| H41 (CH3) | 0.88 | 1.09 | H36 (CH2) | 1.3 | 1.23 |
| H42 (CH3) | 0.88 | 1.01 | H49 (CH2) | 1.3 | 1.23 |
| H33 (CH2) | 1.81 | 1.07 | H38 (CH2) | 1.3 | 1.21 |
| H43 (CH3) | 0.88 | 0.55 | H51 (CH3) | 0.87 | 1.1 |
| H33 (CH2) | 1.44 | 1.09 | |||
| H42 (CH2) | 1.3 | 0.92 | |||
| H52 (CH3) | 0.87 | 0.83 | |||
| H53 (CH3) | 0.87 | 0.81 |
Fig. 5Combined experimental UV–vis. Spectra of 3a (above), 3b (below) in different solvents
Experimental and simulated UV–vis. λmax (nm) values of 3a and 3b measured in DCM, chloroform, methanol and DMSO
| Experimental | Theoretical [TD-SCF/B3LYP/6-31G (d, p)] | ||||
|---|---|---|---|---|---|
| (3a) | λmax1 (abs.) | λmax2 (abs.) | (3b) | λmax1 (osc. strength) | λmax2 (osc. strength) |
| – | – | – | Gas Phase | 300.4 (0.37) | 476.4 (0.21) |
| DCM | 320 (2.50) | 474 (2.13) | DCM | 310.4 (0.30) | 502.9 (0.32) |
| Chloroform | 321 (2.66) | 478 (2.24 | Chloroform | 309 (0.29) | 500.5 (0.32) |
| Methanol | 317 (2.17) | 478 (2.24) | Methanol | 310.4 (0.35) | 503.5 (0.30) |
| DMSO | 319 (0.86) | 472 (0.73) | DMSO | 311.1 (0.28) | 505.4 (0.32) |
| (3b) | (3b) | ||||
| – | – | – | Gas Phase | 300.4 (0.36) | 475.7 (0.21) |
| DCM | 321 (1.30) | 474 (1.11) | DCM | 310.3 (0.28) | 501.9 (0.32) |
| Chloroform | 321 (1.90) | 478 (1.61) | Chloroform | 309.6 (0.28) | 499.5 (0.32) |
| Methanol | 317 (1.06) | 463 (0.87) | Methanol | 310.3 (0.34) | 502.5 (0.31) |
| DMSO | 320 (0.66) | 473 (0.56) | DMSO | 311.1 (0.26) | 504.4 (0.32) |
Fig. 6MEP plot of compounds 3a and 3b
Significant donor–acceptor interactions of 3a/3b and their second order perturbation energies calculated at B3LYP level using 6-31G (d, p) basis set
| Donor (i) (occupancy) | Type | EDA, % EDB, % | Acceptor (j) (occupancy) | Type | EDA, % EDB, % | E(2)a (kcal/mol) | Ej–Eib
| F (i, j) (a.u.) |
|---|---|---|---|---|---|---|---|---|
| BD C3–C4 1.97721 | σ | 49.64 50.36 | BD* C2–C3 0.02660 | σ* | 51.36 48.64 | 3.16 | 1.25 | 0.056 |
| BD C4–C5 1.97419 | σ | 48.62 51.38 | BD* C3–C4 0.01233 | σ* | 50.36 49.64 | 2.53 | 1.29 | 0.051 |
| BD C4–C5 1.59136 | π | 44.97 55.03 | BD* C13–C14 0.24073 | π* | 59.29 40.71 | 22.02 | 0.27 | 0.071 |
| BD C2–C3 1.97034 | σ | 48.64 51.36 | BD* C3–C4 0.01233 | σ* | 50.36 49.64 | 2.69 | 1.30 | 0.053 |
| BD C2–C3 1.60070 | π | 53.51 46.49 | BD* C4–C5 0.42336 | π* | 55.03 44.97 | 25.19 | 0.28 | 0.076 |
| BD C1–C2 1.97300 | σ | 50.22 49.78 | BD* C2–C3 0.02660 | σ* | 51.36 48.64 | 3.44 | 1.26 | 0.059 |
| BD C1–C6 1.97721 | σ | 50.97 49.03 | BD* C5–C6 0.02189 | σ* | 50.82 49.18 | 2.95 | 1.27 | 0.055 |
| BD C1–C6 1.71641 | π | 54.39 45.61 | BD* C2–C3 0.40194 | π* | 46.49 53.51 | 19.81 | 0.29 | 0.069 |
| BD C5–C6 1.97016 | σ | 49.18 50.82 | BD* C4–C5 0.02494 | σ* | 51.38 48.62 | 3.18 | 1.24 | 0.056 |
| BD C7–C12 1.97320 | σ | 49.77 50.23 | BD* C11–C12 0.02533 | σ* | 48.64 51.36 | 3.93 | 1.28 | 0.063 |
| BD C7–C8 1.97672 | σ | 51.41 48.59 | BD* C7–C12 0.03387 | σ* | 50.23 49.77 | 4.58 | 1.26 | 0.068 |
| BD C7–C8 1.69501 | π | 53.56 46.44 | BD* C11–C12 0.38891 | π* | 51.02 48.98 | 20.16 | 0.28 | 0.069 |
| BD C11–C12 1.66680 | π | 48.98 51.02 | BD* C9–C10 0.33937 | π* | 50.66 49.34 | 20.47 | 0.29 | 0.069 |
| BD C9–C10 1.66550 | π | 49.34 50.66 | BD* C7–C8 0.38725 | π* | 46.44 53.56 | 22.74 | 0.27 | 0.071 |
| BD C13–C14 1.81237 | π | 40.71 59.29 | BD* C15–N2 0.08582 | π* | 54.47 45.53 | 19.91 | 0.39 | 0.081 |
| BD C13–C14 1.81237 | π | 40.71 59.29 | BD* C16–N3 0.08857 | π* | 54.71 45.29 | 20.52 | 0.40 | 0.083 |
| LP N1 1.69519 | BD* C2–C3 0.40194 | π* | 46.49 53.51 | 31.28 | 0.27 | 0.084 | ||
| LP N1 1.69519 | BD* C11–C12 0.38891 | π* | 51.02 48.98 | 24.09 | 0.28 | 0.075 | ||
| LP S1 1.84528 | BD* C1–C6 0.34392 | π* | 45.61 54.39 | 12.09 | 0.27 | 0.053 | ||
| LP S1 1.84528 | BD* C7–C8 0.38725 | π* | 46.44 53.56 | 11.23 | 0.27 | 0.053 |
aE(2) means energy of hyperconjucative interactions (stabilization energy)
bEnergy difference between donor (i) and acceptor (j) NBO orbitals
First hyperpolarizability parameters of 3a and 3b
| Compound | 3a | 3b |
|---|---|---|
|
| −7021.88 | 1329.03 |
|
| 1661.22 | −2040.8 |
|
| −130.15 | 3129.93 |
|
| −267.26 | −3673.5 |
|
| −103.44 | −37.627 |
|
| 47.6438 | −20.756 |
|
| −95.5 | −85.957 |
|
| 105.388 | −60.469 |
|
| −32.915 | 88.324 |
|
| −6.2876 | −8.308 |
|
| 62.0307 | 61.7064 |