| Literature DB >> 25854752 |
Muhammad Nadeem Arshad1, Aisha Bibi2, Tariq Mahmood3, Abdullah M Asiri4,5, Khurshid Ayub6,7.
Abstract
We report here a comparative theoretical and experimental study of four triazine-based hydrazone derivatives. The hydrazones are synthesized by a three step process from commercially available benzil and thiosemicarbazide. The structures of all compounds were determined by using the UV-Vis., FT-IR, NMR (1H and 13C) spectroscopic techniques and finally confirmed unequivocally by single crystal X-ray diffraction analysis. Experimental geometric parameters and spectroscopic properties of the triazine based hydrazones are compared with those obtained from density functional theory (DFT) studies. The model developed here comprises of geometry optimization at B3LYP/6-31G (d, p) level of DFT. Optimized geometric parameters of all four compounds showed excellent correlations with the results obtained from X-ray diffraction studies. The vibrational spectra show nice correlations with the experimental IR spectra. Moreover, the simulated absorption spectra also agree well with experimental results (within 10-20 nm). The molecular electrostatic potential (MEP) mapped over the entire stabilized geometries of the compounds indicated their chemical reactivates. Furthermore, frontier molecular orbital (electronic properties) and first hyperpolarizability (nonlinear optical response) were also computed at the B3LYP/6-31G (d, p) level of theory.Entities:
Mesh:
Substances:
Year: 2015 PMID: 25854752 PMCID: PMC6272468 DOI: 10.3390/molecules20045851
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Basic skeleton of different types of triazines.
Scheme 1Synthetic scheme of target compounds 1–4.
Crystal data and structure refinement parameters.
| Identification Code | 1 | 2 | 3 | 4 |
|---|---|---|---|---|
| Empirical formula | C26H19N5O | C23H19N5O | C24H22N6 | C22H17N5O |
| Formula weight | 417.46 | 381.43 | 394.48 | 367.41 |
| Temperature/K | 296.15 | 296.15 | 296.15 | 296.15 |
| Crystal system | monoclinic | monoclinic | triclinic | monoclinic |
| Space group | P21/n | P21/c | P-1 | P21/c |
| a/Å | 6.5745(2) | 5.9756(18) | 8.8933(10) | 14.9753(17) |
| b/Å | 19.9133(6) | 21.573(6) | 11.1477(11) | 6.1220(6) |
| c/Å | 15.9805(5) | 14.980(4) | 11.7484(13) | 21.038(2) |
| α/° | 90.00 | 90.00 | 91.212(9) | 90.00 |
| β/° | 96.369(3) | 93.45(2) | 106.044(10) | 103.992(11) |
| γ/° | 90.00 | 90.00 | 108.519(9) | 90.00 |
| Volume/Å3 | 2079.25(11) | 1927.7(9) | 1053.8(2) | 1871.6(3) |
| Z | 4 | 4 | 2 | 4 |
| ρcalcmg/mm3 | 1.334 | 1.314 | 1.243 | 1.304 |
| m/mm−1 | 0.677 | 0.084 | 0.077 | 0.084 |
| F(000) | 872.0 | 800.0 | 416.0 | 768.0 |
| Crystal size/mm3 | 0.48 × 0.16 × 0.15 | 0.48 × 0.08 × 0.05 | 0.32 × 0.26 × 0.17 | 0.43 × 0.15 × 0.05 |
| 2θ range for data collection | 7.12 to 152° | 5.76 to 58.66° | 5.62 to 58.9° | 5.6 to 59.14° |
| Index ranges | −6 ≤ h ≤ 8, | −7 ≤ h ≤ 8, | −11 ≤ h ≤ 9, | −19 ≤ h ≤ 19, |
| −25 ≤ k ≤ 21, | −27 ≤ k ≤ 24, | −12 ≤ k ≤ 14, | −8 ≤ k ≤ 7, | |
| −20 ≤ l ≤ 19 | −20 ≤ l ≤ 18 | −16 ≤ l ≤ 15 | −29 ≤ l ≤ 26 | |
| Reflections collected | 12339 | 11554 | 9379 | 11939 |
| Independent reflections | 4304[R(int) = 0.0185] | 4608[R(int) = 0.0727] | 5004[R(int) = 0.0252] | 4597[R(int) = 0.0620] |
| Data/restraints/parameters | 4304/0/290 | 4608/1/266 | 5004/0/274 | 4597/1/257 |
| Goodness-of-fit on F2 | 1.036 | 1.012 | 1.038 | 0.961 |
| Final R indexes [I ≥ 2σ (I)] | R1 = 0.0428, | R1 = 0.0626, | R1 = 0.0541, | R1 = 0.0601, |
| wR2 = 0.1156 | wR2 = 0.0925 | wR2 = 0.1221 | wR2 = 0.1236 | |
| Final R indexes [all data] | R1 = 0.0546, | R1 = 0.1988, | R1 = 0.0840, | R1 = 0.1880, |
| wR2 = 0.1273 | wR2 = 0.1358 | wR2 = 0.1423 | wR2 = 0.1670 | |
| Largest diff. peak/hole/e Å−3 | 0.19/−0.20 | 0.16/−0.19 | 0.25/−0.16 | 0.13/−0.16 |
Figure 2ORTEP diagrams of compounds 1–4. Thermal ellipsoids were drawn at 50% probability level.
Figure 3Unit cell diagrams of compounds 1–4 showing the inter- and intramolecular hydrogen bonding.
Hydrogen bond parameters of compounds 1–4.
| D | H | A | d(D-H)/Å | d(H-A)/Å | d(D-A)/Å | D-H-A/° |
|---|---|---|---|---|---|---|
| N4 | H2 | N21 | 0.97 | 1.91 | 2.8750(18) | 171.9 |
| C16 | H16 | N32 | 0.93 | 2.58 | 3.496(4) | 168.5 |
| N4 | H1 | N22 | 0.893(10) | 2.047(11) | 2.939(3) | 176(3) |
| N4 | H1 | N23 | 0.97 | 2.03 | 2.995(2) | 168.8 |
| C24 | H24C | N14 | 0.96 | 2.59 | 3.449(3) | 148.7 |
| O1 | H1O | N5 | 0.82 | 1.93 | 2.646(3) | 146.1 |
| N4 | H2 | N25 | 0.889(10) | 2.033(12) | 2.907(4) | 167(3) |
| 12 − X, −Y, −Z, 21 − X, 1 − Y, 1 − Z, 3−X, −Y, −Z, 41 + X, +Y, +Z, 5−X, 2 − Y, −Z | ||||||
Figure 4Optimized geometries of compounds (1–4) at B3LYP/6-31G (d, p) level of DFT.
Selected molecular structure parameters of compound 1.
| O1-C18 | 1.353(2) | 1.430 |
| N1-C1 | 1.341(18) | 1.335 |
| N1-C2 | 1.327(18) | 1.335 |
| N2-N3 | 1.328(17) | 1.315 |
| N2-C1 | 1.338(19) | 1.354 |
| N3-C3 | 1.336(17) | 1.347 |
| N4-N5 | 1.364(18) | 1.354 |
| N4-C1 | 1.356(19) | 1.368 |
| N5-C16 | 1.286(19) | 1.294 |
| C2-N1-C1 | 116.2(12) | 116.3 |
| N3-N2-C1 | 118.1(12) | 116.9 |
| N2-N3-C3 | 120.2(12) | 121.2 |
| C1-N4-N5 | 119.4(12) | 123.1 |
| C16-N5-N4 | 117.9(13) | 116.6 |
| N1-C1-N4 | 119.3(13) | 120.6 |
| N2-C1-N1 | 125.4(13) | 125.7 |
| N2-C1-N4 | 115.2(13) | 113.5 |
| N1-C2-C3 | 120.0(12) | 119.4 |
| N1-C2-C4 | 114.6(12) | 115.1 |
| N3-C3-C2 | 119.4(13) | 118.9 |
| N3-C3-C10 | 115.0(12) | 114.7 |
| O1-C18-C19 | 116.1(16) | 118.9 |
Selected molecular structure parameters of compound 2.
| O1-C20 | 1.377(3) | 1.362 |
| O1-C23 | 1.426(3) | 1.419 |
| N1-C1 | 1.332(3) | 1.334 |
| N1-C2 | 1.330(3) | 1.335 |
| N2-N3 | 1.343(3) | 1.316 |
| N2-C1 | 1.353(3) | 1.353 |
| N3-C3 | 1.334(3) | 1.346 |
| N4-N5 | 1.387(3) | 1.351 |
| N4-C1 | 1.372(3) | 1.370 |
| C2-N1-C1 | 115.6(2) | 116.3 |
| N3-N2-C1 | 117.3(2) | 116.7 |
| N2-N3-C3 | 120.2(2) | 121.2 |
| C1-N4-N5 | 121.9(2) | 121.9 |
| C16-N5-N4 | 112.5(2) | 119.1 |
| N1-C1-N4 | 122.1(2) | 119.7 |
| N2-C1-N1 | 126.3(2) | 126.1 |
| N2-C1-N4 | 111.6(3) | 114.0 |
| N1-C2-C3 | 120.9(3) | 119.1 |
| N1-C2-C4 | 115.5(2) | 115.3 |
| N3-C3-C2 | 119.4(2) | 119.1 |
| N3-C3-C10 | 113.9(2) | 114.7 |
| C20-O1-C23 | 117.6(3) | 118.5 |
Selected molecular structure parameters of compound 3.
| O1-C1 | 1.347(2) | 1.521 |
| N1-C2 | 1.325(2) | 1.402 |
| N2-N3 | 1.333(2) | 1.540 |
| N2-C1 | 1.351(2) | 1.395 |
| N3-C3 | 1.336(2) | 1.402 |
| N4-N5 | 1.381(2) | 1.540 |
| N4-C1 | 1.349(2) | 1.540 |
| N5-C16 | 1.282(2) | 1.540 |
| N6-C20 | 1.372(2) | 1.383 |
| C2-N1-C1 | 115.3(14) | 116.3 |
| N3-N2-C1 | 118.3(13) | 119.9 |
| N2-N3-C3 | 119.6(14) | 119.6 |
| C1-N4-N5 | 122.4(14) | 109.4 |
| C16-N5-N4 | 113.8(14) | 109.4 |
| N1-C1-N4 | 120.7(15) | 120.9 |
| N2-C1-N1 | 125.4(15) | 118.1 |
| N2-C1-N4 | 113.7(14) | 120.9 |
| N1-C2-C3 | 121.2(15) | 120.4 |
| N1-C2-C4 | 116.5(15) | 119.1 |
| N3-C3-C2 | 119.7(14) | 120.4 |
| N3-C3-C10 | 116.5(14) | 119.1 |
Selected molecular structure parameters of compound 4.
| O1-C18 | 1.357(4) | 1.341 |
| N1-C1 | 1.336(3) | 1.334 |
| N1-C2 | 1.337(3) | 1.336 |
| N2-N3 | 1.338(3) | 1.317 |
| N2-C1 | 1.338(3) | 1.350 |
| N3-C3 | 1.339(3) | 1.346 |
| N4-N5 | 1.383(3) | 1.351 |
| N4-C1 | 1.360(3) | 1.371 |
| N5-C16 | 1.271(3) | 1.291 |
| C2-N1-C1 | 115.9(2) | 116.3 |
| N3-N2-C1 | 117.9(2) | 116.7 |
| N2-N3-C3 | 120.4(2) | 121.2 |
| C1-N4-N5 | 122.5(3) | 121.8 |
| C16-N5-N4 | 115.1(2) | 119.2 |
| N1-C1-N4 | 120.9(3) | 119.6 |
| N2-C1-N1 | 126.0(3) | 126.1 |
| N2-C1-N4 | 113.1(3) | 114.0 |
| N1-C2-C3 | 120.4(2) | 119.0 |
| N1-C2-C4 | 116.0(2) | 115.3 |
| N3-C3-C2 | 119.1(2) | 119.1 |
| N3-C3-C10 | 114.3(2) | 114.6 |
| O1-C18-C19 | 118.3(3) | 115.8 |
Figure 5Simulated (balck) and experimental (blue) vibrational spectra of compounds 1–4.
Prominent experimental and simulated vibrational (cm−1) values of 1–4.
| 1 | 2 | 3 | 4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Exp. B3LYP Assignment | Exp. B3LYP Assignment | Exp. B3LYP Assignment | Exp. B3LYP Assignment | ||||||||
| 1611 | 1595 | ѴC=Carom | 1611 | 1605 | ѴC=C | 1593 | 1605 | ѴC=C | 1621 | 1613 | ѴC=Carom |
| 1542 | ѴC=Narom | 1542 | ѴC=Narom | 1550 | ѴC=N | 1565 | ѴC=Carom | ||||
| 1512 | ѴC=Narom | 1511 | ѴC=Narom | 1538 | ѴC=Narom | 1536 | ѴC=Narom | ||||
| 1367 | 1506 | ѴN=Carom | 1350 | 1499 | ѴC=Carom | 1428 | 1511 | ѴN=Carom | 1375 | 1510 | ѴC=Narom |
| 1319 | ѴC-Carom | 1318 | ѴC-Carom | 1508 | ѴC=Narom | 1353 | βCHarom | ||||
| 1301 | ѴC-Carom | 1250 | ѴO-Ph | 1341 | ѴNPh | 1251 | ѴC-Carom | ||||
| 1239 | 1252 | ѴC-Carom | 1167 | 1127 | βCHarom | 1277 | 1257 | ѴC-Carom | 1133 | 1127 | ѴC=Narom |
| 1179 | 1127 | ѴC=Narom | 1126 | ѴC=Narom | 1171 | βCHarom | 1078 | 1081 | βCHarom | ||
| 1062 | 1061 | βCHarom | 1060 | 1080 | βCHarom | 1160 | 1126 | ѴC=Narom | 1062 | 1061 | βCHarom |
| 756 | 775 | βCHarom | 1060 | βCHarom | 1052 | 1079 | βCHarom | 750 | 724 | γCHarom | |
| 764 | 759 | γCHarom | 807 | 803 | γCHarom | 688 | 686 | γCHarom | |||
| 516 | 540 | γCHarom | |||||||||
Simulated 1H-NMR chemical shifts of 1–4 (ppm) at B3LYP/6-311+G (2d, p) level (atomic labels are with reference to Figure 4).
| (1) | B3LYP (ppm) | (2) | B3LYP (ppm) | (3) | B3LYP (ppm) | (4) | B3LYP (ppm) |
|---|---|---|---|---|---|---|---|
| 51H | 12.87 | 10H | 8.88 | 10H | 8.87 | 43H | 11.34 |
| 31H | 9.39 | 19H | 8.79 | 19H | 8.82 | 10H | 8.87 |
| 10H | 8.98 | 48H | 8.67 | 40H | 8.64 | 19H | 8.76 |
| 19H | 8.67 | 29H | 8.49 | 29H | 8.42 | 29H | 8.34 |
| 29H | 8.43 | 31H | 8.00 | 31H | 7.93 | 31H | 8.28 |
| 41H | 8.39 | 13H | 7.84 | 13H | 7.82 | 13H | 7.90 |
| 48H | 8.06 | 23H | 7.83 | 23H | 7.80 | 23H | 7.85 |
| 47H | 8.05 | 14H | 7.63 | 14H | 7.62 | 14H | 7.68 |
| 13H | 7.97 | 25H | 7.62 | 8H | 7.60 | 25H | 7.66 |
| 23H | 7.89 | 8H | 7.57 | 25H | 7.59 | 41H | 7.58 |
| 46H | 7.83 | 41H | 7.44 | 38H | 7.37 | 8H | 7.57 |
| 14H | 7.64 | 24H | 7.35 | 24H | 7.33 | 44H | 7.46 |
| 8H | 7.64 | 12H | 7.31 | 12H | 7.31 | 24H | 7.37 |
| 25H | 7.63 | 40H | 7.29 | 21H | 7.20 | 40H | 7.37 |
| 49H | 7.62 | 21H | 7.21 | 43H | 6.87 | 12H | 7.33 |
| 44H | 7.55 | 42H | 6.83 | 42H | 6.74 | 21H | 7.25 |
| 24H | 7.40 | 46H | 4.11 | 49H | 3.41 | 45H | 6.99 |
| 21H | 7.36 | 47H | 3.71 | 46H | 3.40 | ||
| 12H | 7.28 | 45H | 3.71 | 47H | 3.08 | ||
| 51H | 3.06 | ||||||
| 45H | 2.75 | ||||||
| 50H | 2.71 |
Figure 6HOMO, LUMO surfaces of compounds 1–4 simulated at B3LYP/6-31G (d, p).
Frontier orbital energy (a. u).
| Compound | E (HOMO) | E (LUMO) | ΔE (LUMO‒HOMO) |
|---|---|---|---|
| −0.196 | −0.0713 | 0.124 | |
| −0.196 | −0.064 | 0.132 | |
| −0.18 | −0.060 | 0.119 | |
| −0.204 | −0.072 | 0.133 |
Figure 7Combined experimental UV-vis. spectra of all compounds 1–4.
Experimental and simulated (B3LYP/6-31G (d, p)) UV-vis. λmax (nm) values of title compounds 1–4.
| Experimental | Theoretical (TD-SCF/B3LYP/6-31G (d, p)) | |||
|---|---|---|---|---|
| Compound | λmax (abs.) (DMSO) | λmax (osc. Strength), Gas Phase | λmax (osc. Strength) DMSO | Assignment |
| (1) | 333 (0.419), 374 (0.454) | 380.8 (0.782) | 390.3 (0.945) | π‒π* |
| (2) | 337 (1.903) | 345.2 (1.189) | 358.2 (1.401) | π‒π* |
| (3) | 366 (2.834) | 370.4 (1.147) | 395.5 (1.196) | π‒π* |
| (4) | 312 (0.567), 342 (0.697) | 350.2 (0.739) | 356.1 (1.007) | π‒π* |
Figure 8MEP surfaces of compounds 1–4.
First hyperpolarizability parameters of 1–4.
| Compound | 1 | 2 | 3 | 4 |
|---|---|---|---|---|
| βxxx | 2300.433 | 3639.217 | 8152.091 | 1281.031 |
| βxxy | 6.139 | 41.559 | −559.94 | 223.445 |
| βxyy | −520.79 | 207.2331 | −62.360 | −303.73 |
| βyyy | −244.06 | −402.645 | −357.94 | −459.49 |
| βxxz | 584.743 | 17.3065 | −46.037 | 40.0394 |
| βxyz | 33.763 | 64.606 | 94.261 | 42.973 |
| βyyz | 1.283 | −3.485 | −15.970 | 0.236 |
| βxzz | 39.428 | 1.523 | −8.302 | 34.723 |
| βyzz | 14.681 | 4.147 | 37.649 | 17.0493 |
| βzzz | 9.201 | 9.715 | −8.129 | 7.664 |
Reactivity indices of compounds 1–4.
| Properties | 1 | 2 | 3 | 4 |
|---|---|---|---|---|
| ETotal (eV) | 0.124 | 0.132 | 0.119 | 0.133 |
| EHOMO | −0.196 | −0.196 | −0.18 | −0.204 |
| ELUMO | −0.0713 | −0.064 | −0.060 | −0.072 |
| η (eV) | 0.062 | 0.066 | 0.059 | 0.066 |
| µ (eV) | −0.133 | −0.13 | −0.120 | −0.138 |
| ω (eV) | 0.142 | 0.128 | 0.119 | 0.143 |
| µ(Debye) | 1.01 | 3.12 | 5.37 | 0.57 |