Literature DB >> 26979070

Ws-2 Introgression in a Proportion of Arabidopsis thaliana Col-0 Stock Seed Produces Specific Phenotypes and Highlights the Importance of Routine Genetic Verification.

Mon-Ray Shao1, Vikas Shedge1, Hardik Kundariya1, Fredric R Lehle2, Sally A Mackenzie3.   

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Year:  2016        PMID： 26979070      PMCID： PMC4826017          DOI： 10.1105/tpc.16.00053

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


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  11 in total

1.  SHOREmap: simultaneous mapping and mutation identification by deep sequencing.

Authors:  Korbinian Schneeberger; Stephan Ossowski; Christa Lanz; Trine Juul; Annabeth Høgh Petersen; Kåre Lehmann Nielsen; Jan-Elo Jørgensen; Detlef Weigel; Stig Uggerhø Andersen
Journal:  Nat Methods       Date:  2009-08       Impact factor: 28.547

2.  Source verification of mis-identified Arabidopsis thaliana accessions.

Authors:  Alison E Anastasio; Alexander Platt; Matthew Horton; Erich Grotewold; Randy Scholl; Justin O Borevitz; Magnus Nordborg; Joy Bergelson
Journal:  Plant J       Date:  2011-06-16       Impact factor: 6.417

3.  Genome Sequencing of Arabidopsis abp1-5 Reveals Second-Site Mutations That May Affect Phenotypes.

Authors:  Tara A Enders; Sookyung Oh; Zhenbiao Yang; Beronda L Montgomery; Lucia C Strader
Journal:  Plant Cell       Date:  2015-06-23       Impact factor: 11.277

4.  From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.

Authors:  Geraldine A Van der Auwera; Mauricio O Carneiro; Christopher Hartl; Ryan Poplin; Guillermo Del Angel; Ami Levy-Moonshine; Tadeusz Jordan; Khalid Shakir; David Roazen; Joel Thibault; Eric Banks; Kiran V Garimella; David Altshuler; Stacey Gabriel; Mark A DePristo
Journal:  Curr Protoc Bioinformatics       Date:  2013

5.  Intraspecific Arabidopsis hybrids show different patterns of heterosis despite the close relatedness of the parental genomes.

Authors:  Michael Groszmann; Rebeca Gonzalez-Bayon; Ian K Greaves; Li Wang; Amanda K Huen; W James Peacock; Elizabeth S Dennis
Journal:  Plant Physiol       Date:  2014-07-29       Impact factor: 8.340

6.  Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis.

Authors:  Elizabeth A Greene; Christine A Codomo; Nicholas E Taylor; Jorja G Henikoff; Bradley J Till; Steven H Reynolds; Linda C Enns; Chris Burtner; Jessica E Johnson; Anthony R Odden; Luca Comai; Steven Henikoff
Journal:  Genetics       Date:  2003-06       Impact factor: 4.562

7.  Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes.

Authors:  Laurène Giraut; Matthieu Falque; Jan Drouaud; Lucie Pereira; Olivier C Martin; Christine Mézard
Journal:  PLoS Genet       Date:  2011-11-03       Impact factor: 5.917

8.  Plant genetic archaeology: whole-genome sequencing reveals the pedigree of a classical trisomic line.

Authors:  Patrice A Salomé; Detlef Weigel
Journal:  G3 (Bethesda)       Date:  2014-12-18       Impact factor: 3.154

9.  Protocol: optimising hydroponic growth systems for nutritional and physiological analysis of Arabidopsis thaliana and other plants.

Authors:  Simon J Conn; Bradleigh Hocking; Maclin Dayod; Bo Xu; Asmini Athman; Sam Henderson; Lucy Aukett; Vanessa Conn; Monique K Shearer; Sigfredo Fuentes; Stephen D Tyerman; Matthew Gilliham
Journal:  Plant Methods       Date:  2013-02-05       Impact factor: 4.993

10.  SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data.

Authors:  Tae-Ho Lee; Hui Guo; Xiyin Wang; Changsoo Kim; Andrew H Paterson
Journal:  BMC Genomics       Date:  2014-02-26       Impact factor: 3.969
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  7 in total

1.  Specialized Plastids Trigger Tissue-Specific Signaling for Systemic Stress Response in Plants.

Authors:  Jesús Beltrán; Yashitola Wamboldt; Robersy Sanchez; Evan W LaBrant; Hardik Kundariya; Kamaldeep S Virdi; Christian Elowsky; Sally A Mackenzie
Journal:  Plant Physiol       Date:  2018-08-22       Impact factor: 8.340

2.  Analysis of Arabidopsis Accessions Hypersensitive to a Loss of Chloroplast Translation.

Authors:  Nicole Parker; Yixing Wang; David Meinke
Journal:  Plant Physiol       Date:  2016-10-05       Impact factor: 8.340

3.  Reported differences in the flg22 response of the null mutation of AtRGS1 correlates with fixed genetic variation in the background of Col-0 isolates.

Authors:  Khem Raj Ghusinga; Franco Paredes; Alan M Jones; Alejandro Colaneri
Journal:  Plant Signal Behav       Date:  2021-01-31

4.  The high-affinity metal Transporters NRAMP1 and IRT1 Team up to Take up Iron under Sufficient Metal Provision.

Authors:  Loren Castaings; Antoine Caquot; Stéphanie Loubet; Catherine Curie
Journal:  Sci Rep       Date:  2016-11-16       Impact factor: 4.379

5.  RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73.

Authors:  Zhikai Liang; James C Schnable
Journal:  PLoS One       Date:  2016-06-27       Impact factor: 3.240

6.  Next-generation forward genetic screens: using simulated data to improve the design of mapping-by-sequencing experiments in Arabidopsis.

Authors:  David Wilson-Sánchez; Samuel Daniel Lup; Raquel Sarmiento-Mañús; María Rosa Ponce; José Luis Micol
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

7.  Meta-analysis identifies pleiotropic loci controlling phenotypic trade-offs in sorghum.

Authors:  Ravi V Mural; Marcin Grzybowski; Chenyong Miao; Alyssa Damke; Sirjan Sapkota; Richard E Boyles; Maria G Salas Fernandez; Patrick S Schnable; Brandi Sigmon; Stephen Kresovich; James C Schnable
Journal:  Genetics       Date:  2021-07-14       Impact factor: 4.402
  7 in total

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