Literature DB >> 26976642

Base Excision Repair, a Pathway Regulated by Posttranslational Modifications.

Rachel J Carter1, Jason L Parsons2.   

Abstract

Base excision repair (BER) is an essential DNA repair pathway involved in the maintenance of genome stability and thus in the prevention of human diseases, such as premature aging, neurodegenerative diseases, and cancer. Protein posttranslational modifications (PTMs), including acetylation, methylation, phosphorylation, SUMOylation, and ubiquitylation, have emerged as important contributors in controlling cellular BER protein levels, enzymatic activities, protein-protein interactions, and protein cellular localization. These PTMs therefore play key roles in regulating the BER pathway and are consequently crucial for coordinating an efficient cellular DNA damage response. In this review, we summarize the presently available data on characterized PTMs of key BER proteins, the functional consequences of these modifications at the protein level, and also the impact on BER in vitro and in vivo.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID: 26976642      PMCID: PMC4859697          DOI: 10.1128/MCB.00030-16

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  97 in total

1.  Catalytic center of DNA polymerase beta for excision of deoxyribose phosphate groups.

Authors:  Y Matsumoto; K Kim; D S Katz; J A Feng
Journal:  Biochemistry       Date:  1998-05-05       Impact factor: 3.162

2.  CK2 phosphorylation of XRCC1 facilitates dissociation from DNA and single-strand break formation during base excision repair.

Authors:  Cecilia E Ström; Oliver Mortusewicz; David Finch; Jason L Parsons; Anne Lagerqvist; Fredrik Johansson; Niklas Schultz; Klaus Erixon; Grigory L Dianov; Thomas Helleday
Journal:  DNA Repair (Amst)       Date:  2011-08-15

3.  Over-expression of SUMO-1 induces the up-regulation of heterogeneous nuclear ribonucleoprotein A2/B1 isoform B1 (hnRNP A2/B1 isoform B1) and uracil DNA glycosylase (UDG) in hepG2 cells.

Authors:  Kit Wan Ma; Shannon W N Au; Mary M Y Waye
Journal:  Cell Biochem Funct       Date:  2009-06       Impact factor: 3.685

4.  CHFR protein regulates mitotic checkpoint by targeting PARP-1 protein for ubiquitination and degradation.

Authors:  Lisa Kashima; Masashi Idogawa; Hiroaki Mita; Miki Shitashige; Tesshi Yamada; Kazuhiro Ogi; Hiromu Suzuki; Minoru Toyota; Hiroyoshi Ariga; Yasushi Sasaki; Takashi Tokino
Journal:  J Biol Chem       Date:  2012-02-15       Impact factor: 5.157

5.  HIV-1 Vpr function is mediated by interaction with the damage-specific DNA-binding protein DDB1.

Authors:  Bärbel Schröfelbauer; Yoshiyuki Hakata; Nathaniel R Landau
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-28       Impact factor: 11.205

6.  The protein kinase CK2 facilitates repair of chromosomal DNA single-strand breaks.

Authors:  Joanna I Loizou; Sherif F El-Khamisy; Anastasia Zlatanou; David J Moore; Douglas W Chan; Jun Qin; Stefania Sarno; Flavio Meggio; Lorenzo A Pinna; Keith W Caldecott
Journal:  Cell       Date:  2004-04-02       Impact factor: 41.582

7.  Ubiquitination of human AP-endonuclease 1 (APE1) enhanced by T233E substitution and by CDK5.

Authors:  Carlos S Busso; Courtney M Wedgeworth; Tadahide Izumi
Journal:  Nucleic Acids Res       Date:  2011-07-03       Impact factor: 16.971

8.  Ubiquitin ligase UBR3 regulates cellular levels of the essential DNA repair protein APE1 and is required for genome stability.

Authors:  Cornelia Meisenberg; Phillip S Tait; Irina I Dianova; Katherine Wright; Mariola J Edelmann; Nicola Ternette; Takafumi Tasaki; Benedikt M Kessler; Jason L Parsons; Yong Tae Kwon; Grigory L Dianov
Journal:  Nucleic Acids Res       Date:  2011-09-20       Impact factor: 16.971

9.  ATM mediates oxidative stress-induced dephosphorylation of DNA ligase IIIalpha.

Authors:  Zhiwan Dong; Alan E Tomkinson
Journal:  Nucleic Acids Res       Date:  2006-10-12       Impact factor: 16.971

10.  MBD4 interacts with and recruits USP7 to heterochromatic foci.

Authors:  Huan Meng; David J Harrison; Richard R Meehan
Journal:  J Cell Biochem       Date:  2015-03       Impact factor: 4.429

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  49 in total

Review 1.  PARP-1 and its associated nucleases in DNA damage response.

Authors:  Yijie Wang; Weibo Luo; Yingfei Wang
Journal:  DNA Repair (Amst)       Date:  2019-07-08

Review 2.  Emerging roles for histone modifications in DNA excision repair.

Authors:  Peng Mao; John J Wyrick
Journal:  FEMS Yeast Res       Date:  2016-10-12       Impact factor: 2.796

Review 3.  CREBBP and p300 lysine acetyl transferases in the DNA damage response.

Authors:  Ilaria Dutto; Claudia Scalera; Ennio Prosperi
Journal:  Cell Mol Life Sci       Date:  2017-11-23       Impact factor: 9.261

4.  Fine-tuning DNA repair by protein acetylation.

Authors:  Sanjay Kumar Bharti; Robert M Brosh
Journal:  Cell Cycle       Date:  2016-06-13       Impact factor: 4.534

5.  An Excimer Clamp for Measuring Damaged-Base Excision by the DNA Repair Enzyme NTH1.

Authors:  Yong Woong Jun; David L Wilson; Anna M Kietrys; Elizabeth R Lotsof; Savannah G Conlon; Sheila S David; Eric T Kool
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-17       Impact factor: 15.336

6.  Modification of the base excision repair enzyme MBD4 by the small ubiquitin-like molecule SUMO1.

Authors:  Mara Sannai; Valentina Doneddu; Veda Giri; Steven Seeholzer; Emmanuelle Nicolas; Shu-Chin Yip; Maria Rosaria Bassi; Pietro Mancuso; Salvatore Cortellino; Antonio Cigliano; Rebecca Lurie; Hua Ding; Jonathan Chernoff; Robert W Sobol; Timothy J Yen; Luigi Bagella; Alfonso Bellacosa
Journal:  DNA Repair (Amst)       Date:  2019-08-08

7.  Disordered N-Terminal Domain of Human Uracil DNA Glycosylase (hUNG2) Enhances DNA Translocation.

Authors:  Gaddiel Rodriguez; Alexandre Esadze; Brian P Weiser; Joseph D Schonhoft; Philip A Cole; James T Stivers
Journal:  ACS Chem Biol       Date:  2017-08-15       Impact factor: 5.100

8.  Measurement of nanoscale DNA translocation by uracil DNA glycosylase in human cells.

Authors:  Alexandre Esadze; Gaddiel Rodriguez; Brian P Weiser; Philip A Cole; James T Stivers
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

Review 9.  Functions of the major abasic endonuclease (APE1) in cell viability and genotoxin resistance.

Authors:  Daniel R McNeill; Amy M Whitaker; Wesley J Stark; Jennifer L Illuzzi; Peter J McKinnon; Bret D Freudenthal; David M Wilson
Journal:  Mutagenesis       Date:  2020-02-13       Impact factor: 3.000

Review 10.  Facilitated Diffusion Mechanisms in DNA Base Excision Repair and Transcriptional Activation.

Authors:  Alexandre Esadze; James T Stivers
Journal:  Chem Rev       Date:  2018-10-31       Impact factor: 60.622

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