Literature DB >> 26974504

Identification of virulence factors and antibiotic resistance markers using bacterial genomics.

Sofiane Bakour1, Senthil Alias Sankar1, Jaishriram Rathored1, Philippe Biagini2, Didier Raoult1, Pierre-Edouard Fournier1.   

Abstract

In recent years, the number of multidrug-resistant bacteria has increased rapidly and several epidemics were signaled in different regions of the world. Faced with this situation that presents a major global public health concern, the development and the use of new and rapid technologies is more than urgent. The use of the next-generation sequencing platforms by microbiologists and infectious disease specialists has allowed great progress in the medical field. Here, we review the usefulness of whole-genome sequencing for the detection of virulence and antibiotic resistance associated genes.

Entities:  

Keywords:  antibiotic resistance; bacteria; virulence; whole-genome sequencing

Mesh：

Substances：

Year:  2016        PMID： 26974504     DOI： 10.2217/fmb.15.149

Source DB:  PubMed          Journal:  Future Microbiol        ISSN： 1746-0913            Impact factor:   3.165


  9 in total

Review 1.  Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing.

Authors:  J Ronholm; Neda Nasheri; Nicholas Petronella; Franco Pagotto
Journal:  Clin Microbiol Rev       Date:  2016-10       Impact factor: 26.132

2.  Multiantigenic Nanotoxoids for Antivirulence Vaccination against Antibiotic-Resistant Gram-Negative Bacteria.

Authors:  Xiaoli Wei; Danni Ran; Anaamika Campeau; Crystal Xiao; Jiarong Zhou; Diana Dehaini; Yao Jiang; Ashley V Kroll; Qiangzhe Zhang; Weiwei Gao; David J Gonzalez; Ronnie H Fang; Liangfang Zhang
Journal:  Nano Lett       Date:  2019-06-11       Impact factor: 11.189

3.  Genome Target Evaluator (GTEvaluator): A workflow exploiting genome dataset to measure the sensitivity and specificity of genetic markers.

Authors:  Arnaud Felten; Laurent Guillier; Nicolas Radomski; Michel-Yves Mistou; Renaud Lailler; Sabrina Cadel-Six
Journal:  PLoS One       Date:  2017-07-27       Impact factor: 3.240

4.  Comprehensive Virulence Gene Profiling of Bovine Non-aureus Staphylococci Based on Whole-Genome Sequencing Data.

Authors:  Sohail Naushad; S Ali Naqvi; Diego Nobrega; Christopher Luby; John P Kastelic; Herman W Barkema; Jeroen De Buck
Journal:  mSystems       Date:  2019-03-05       Impact factor: 6.496

5.  Genomic characterization of Citrobacter freundii strains coproducing OXA-48 and VIM-1 carbapenemase enzymes isolated in leukemic patient in Spain.

Authors:  Rym Lalaoui; Ana Djukovic; Sofiane Bakour; Linda Hadjadj; Jaime Sanz; Miguel Salavert; Jose Luis López-Hontangas; Miguel A Sanz; Carles Ubeda; Jean-Marc Rolain
Journal:  Antimicrob Resist Infect Control       Date:  2019-10-29       Impact factor: 4.887

Review 6.  Drug Resistance in Nontuberculous Mycobacteria: Mechanisms and Models.

Authors:  Saloni Saxena; Herman P Spaink; Gabriel Forn-Cuní
Journal:  Biology (Basel)       Date:  2021-01-29

7.  Molecular Insights into an Antibiotic Enhancer Action of New Morpholine-Containing 5-Arylideneimidazolones in the Fight against MDR Bacteria.

Authors:  Aneta Kaczor; Karolina Witek; Sabina Podlewska; Veronique Sinou; Joanna Czekajewska; Ewa Żesławska; Agata Doroz-Płonka; Annamaria Lubelska; Gniewomir Latacz; Wojciech Nitek; Markus Bischoff; Sandrine Alibert; Jean-Marie Pagès; Claus Jacob; Elżbieta Karczewska; Jean-Michel Bolla; Jadwiga Handzlik
Journal:  Int J Mol Sci       Date:  2021-02-19       Impact factor: 5.923

8.  Recombinant PilS: Cloning, Expression and Biochemical Characterization of a Pil-Fimbriae Subunit.

Authors:  Danielle D Munhoz; Jessika C A Silva; Natalia C Freitas; Leo K Iwai; Karina A Aires; Christiane Y Ozaki; Cristiane S Souza; Letícia B Rocha; Miriam A Silva; Izabella M Henrique; Waldir P Elias; Eneas Carvalho; Ligia Morganti; Rosa M Chura-Chambi; Roxane M F Piazza
Journal:  Microorganisms       Date:  2022-06-07

9.  A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria.

Authors:  Erki Aun; Age Brauer; Veljo Kisand; Tanel Tenson; Maido Remm
Journal:  PLoS Comput Biol       Date:  2018-10-22       Impact factor: 4.475
  9 in total

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