| Literature DB >> 26958393 |
Jong Won Shin1, Dae-Woong Kim1, Dohyun Moon1.
Abstract
The title compound, [Ni(C6H4NO2)2(C16H38N6)], was prepared through self-assembly of a nickel(II) aza-macrocyclic complex with isonicotinic acid. The Ni(II) atom is located on an inversion center and exhibits a distorted octa-hedral N4O2 coordination environment, with the four secondary N atoms of the aza-macrocyclic ligand in the equatorial plane [average Ni-Neq = 2.064 (11) Å] and two O atoms of monodentate isonicotinate anions in axial positions [Ni-Oax = 2.137 (1) Å]. Intra-molecular N-H⋯O hydrogen bonds between one of the secondary amine N atoms of the aza-macrocyclic ligand and the non-coordinating carboxyl-ate O atom of the anion stabilize the mol-ecular structure. Inter-molecular N-H⋯N hydrogen bonds, as well as π-π inter-actions between neighbouring pyridine rings, give rise to the formations of supra-molecular ribbons extending parallel to [001].Entities:
Keywords: azamacrocyclic ligand; crystal structure; isonicotinic acid; synchrotron data; π–π interactions
Year: 2016 PMID: 26958393 PMCID: PMC4770951 DOI: 10.1107/S2056989016001031
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of the molecular structure of the title compound, showing the atom-labelling scheme, with displacement ellipsoids drawn at the 30% probability level. H atoms bonded to C atoms have been omitted for clarity. Intramolecular N—H⋯O hydrogen bonds are shown as red dashed lines. [Symmetry code: (i) −x + 1, −y + 1, −z + 1.]
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2 | 1.00 | 1.98 | 2.892 (2) | 150 |
| N2—H2⋯N4i | 1.00 | 2.23 | 3.143 (2) | 151 |
Symmetry code: (i) .
Figure 2View of the crystal packing of the title compound, showing hydrogen bonds and π–π interactions (red: intramolecular N—H⋯O hydrogen bonds, green: intermolecular N—H⋯N hydrogen bonds, black: π–π interactions).
Experimental details
| Crystal data | |
| Chemical formula | [Ni(C6H4NO2)2(C16H38N6)] |
|
| 617.44 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 8.0630 (16), 8.5110 (17), 10.927 (2) |
| α, β, γ (°) | 80.52 (3), 88.26 (3), 86.44 (3) |
|
| 738.0 (3) |
|
| 1 |
| Radiation type | Synchrotron, λ = 0.62998 Å |
| μ (mm−1) | 0.51 |
| Crystal size (mm) | 0.01 × 0.004 × 0.004 |
| Data collection | |
| Diffractometer | ADSC Q210 CCD area detector |
| Absorption correction | Empirical ( |
|
| 0.995, 0.998 |
| No. of measured, independent and observed [ | 7634, 3879, 3326 |
|
| 0.023 |
| (sin θ/λ)max (Å−1) | 0.696 |
| Refinement | |
|
| 0.040, 0.110, 1.04 |
| No. of reflections | 3879 |
| No. of parameters | 188 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 1.12, −0.95 |
Computer programs: PAL BL2D-SMDC (Shin et al., 2016 ▸ a), HKL-3000SM (Otwinowski & Minor, 1997 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), DIAMOND (Putz & Brandenburg, 2014 ▸) and publCIF (Westrip, 2010 ▸).
| [Ni(C6H4NO2)2(C16H38N6)] | |
| Triclinic, | |
| Synchrotron radiation, λ = 0.62998 Å | |
| Cell parameters from 20128 reflections | |
| θ = 0.4–33.6° | |
| α = 80.52 (3)° | µ = 0.51 mm−1 |
| β = 88.26 (3)° | |
| γ = 86.44 (3)° | Needle, pale pink |
| 0.01 × 0.004 × 0.004 mm |
| ADSC Q210 CCD area-detector diffractometer | 3326 reflections with |
| Radiation source: PLSII 2D bending magnet | |
| ω scan | θmax = 26.0°, θmin = 2.5° |
| Absorption correction: empirical (using intensity measurements) ( | |
| 7634 measured reflections | |
| 3879 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3879 reflections | Δρmax = 1.12 e Å−3 |
| 188 parameters | Δρmin = −0.95 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Ni1 | 0.5000 | 0.5000 | 0.5000 | 0.02066 (10) | |
| O1 | 0.43513 (15) | 0.41029 (17) | 0.33736 (11) | 0.0257 (3) | |
| O2 | 0.18613 (16) | 0.52908 (19) | 0.28022 (12) | 0.0322 (3) | |
| N1 | 0.27809 (18) | 0.6311 (2) | 0.50735 (13) | 0.0244 (3) | |
| H1 | 0.2171 | 0.6276 | 0.4296 | 0.029* | |
| N2 | 0.61452 (18) | 0.67953 (19) | 0.38249 (13) | 0.0241 (3) | |
| H2 | 0.5798 | 0.6766 | 0.2959 | 0.029* | |
| N3 | 0.3946 (2) | 0.8835 (2) | 0.41256 (14) | 0.0304 (3) | |
| N4 | 0.3686 (2) | 0.2837 (2) | −0.09149 (14) | 0.0335 (4) | |
| C1 | 0.1835 (2) | 0.5457 (3) | 0.61221 (15) | 0.0276 (4) | |
| H1A | 0.0642 | 0.5807 | 0.6057 | 0.033* | |
| H1B | 0.2242 | 0.5692 | 0.6915 | 0.033* | |
| C2 | 0.3004 (2) | 0.8006 (2) | 0.51521 (16) | 0.0296 (4) | |
| H2A | 0.1895 | 0.8566 | 0.5192 | 0.036* | |
| H2B | 0.3574 | 0.8058 | 0.5933 | 0.036* | |
| C3 | 0.5703 (2) | 0.8414 (2) | 0.41070 (18) | 0.0308 (4) | |
| H3A | 0.6153 | 0.8493 | 0.4926 | 0.037* | |
| H3B | 0.6249 | 0.9202 | 0.3480 | 0.037* | |
| C4 | 0.7938 (2) | 0.6330 (3) | 0.39084 (16) | 0.0280 (4) | |
| H4A | 0.8376 | 0.6572 | 0.4689 | 0.034* | |
| H4B | 0.8552 | 0.6932 | 0.3203 | 0.034* | |
| C5 | 0.3160 (2) | 0.9034 (2) | 0.29077 (17) | 0.0310 (4) | |
| H5A | 0.2983 | 0.7968 | 0.2700 | 0.037* | |
| H5B | 0.3922 | 0.9575 | 0.2269 | 0.037* | |
| C6 | 0.1502 (3) | 0.9999 (3) | 0.28701 (18) | 0.0341 (4) | |
| H6A | 0.0727 | 0.9447 | 0.3493 | 0.041* | |
| H6B | 0.1671 | 1.1058 | 0.3093 | 0.041* | |
| C7 | 0.0730 (3) | 1.0223 (3) | 0.15954 (19) | 0.0390 (5) | |
| H7A | 0.1527 | 1.0726 | 0.0966 | 0.047* | |
| H7B | 0.0507 | 0.9166 | 0.1390 | 0.047* | |
| C8 | −0.0882 (3) | 1.1257 (4) | 0.1543 (2) | 0.0502 (6) | |
| H8A | −0.1692 | 1.0739 | 0.2140 | 0.075* | |
| H8B | −0.1328 | 1.1395 | 0.0705 | 0.075* | |
| H8C | −0.0667 | 1.2302 | 0.1750 | 0.075* | |
| C9 | 0.3163 (2) | 0.4477 (2) | 0.26295 (15) | 0.0235 (3) | |
| C10 | 0.4760 (2) | 0.2978 (3) | 0.10910 (16) | 0.0294 (4) | |
| H10 | 0.5631 | 0.2691 | 0.1666 | 0.035* | |
| C11 | 0.3367 (2) | 0.3884 (2) | 0.13963 (14) | 0.0234 (3) | |
| C12 | 0.2134 (2) | 0.4252 (3) | 0.05120 (16) | 0.0300 (4) | |
| H12 | 0.1158 | 0.4874 | 0.0676 | 0.036* | |
| C13 | 0.2347 (2) | 0.3703 (3) | −0.06044 (17) | 0.0339 (4) | |
| H13 | 0.1486 | 0.3957 | −0.1191 | 0.041* | |
| C14 | 0.4868 (2) | 0.2496 (3) | −0.00601 (17) | 0.0340 (4) | |
| H14 | 0.5838 | 0.1887 | −0.0256 | 0.041* |
| Ni1 | 0.01767 (15) | 0.03464 (19) | 0.00987 (14) | 0.00142 (11) | −0.00201 (9) | −0.00504 (11) |
| O1 | 0.0246 (6) | 0.0412 (7) | 0.0122 (5) | 0.0012 (5) | −0.0054 (4) | −0.0073 (5) |
| O2 | 0.0235 (6) | 0.0543 (9) | 0.0207 (6) | 0.0047 (6) | −0.0043 (5) | −0.0139 (6) |
| N1 | 0.0225 (7) | 0.0384 (8) | 0.0122 (6) | 0.0027 (6) | −0.0022 (5) | −0.0048 (6) |
| N2 | 0.0227 (7) | 0.0355 (8) | 0.0142 (6) | 0.0007 (6) | −0.0016 (5) | −0.0049 (6) |
| N3 | 0.0338 (8) | 0.0354 (9) | 0.0209 (7) | 0.0055 (7) | −0.0018 (6) | −0.0041 (7) |
| N4 | 0.0344 (8) | 0.0525 (11) | 0.0148 (6) | 0.0002 (7) | −0.0027 (6) | −0.0091 (7) |
| C1 | 0.0186 (7) | 0.0485 (11) | 0.0149 (7) | 0.0026 (7) | 0.0012 (5) | −0.0052 (7) |
| C2 | 0.0331 (9) | 0.0384 (10) | 0.0169 (8) | 0.0078 (8) | −0.0008 (6) | −0.0068 (7) |
| C3 | 0.0339 (9) | 0.0350 (10) | 0.0240 (8) | −0.0011 (7) | −0.0018 (7) | −0.0063 (8) |
| C4 | 0.0205 (8) | 0.0460 (11) | 0.0173 (7) | −0.0038 (7) | 0.0002 (6) | −0.0043 (7) |
| C5 | 0.0376 (10) | 0.0345 (10) | 0.0188 (8) | 0.0059 (8) | −0.0014 (7) | −0.0011 (7) |
| C6 | 0.0356 (10) | 0.0414 (11) | 0.0227 (9) | 0.0064 (8) | −0.0008 (7) | −0.0009 (8) |
| C7 | 0.0394 (11) | 0.0506 (13) | 0.0243 (9) | 0.0048 (9) | −0.0033 (7) | −0.0006 (9) |
| C8 | 0.0400 (12) | 0.0733 (18) | 0.0320 (11) | 0.0119 (11) | −0.0033 (9) | 0.0018 (11) |
| C9 | 0.0213 (7) | 0.0366 (9) | 0.0128 (7) | −0.0044 (6) | −0.0018 (5) | −0.0040 (6) |
| C10 | 0.0258 (8) | 0.0468 (11) | 0.0160 (7) | 0.0028 (7) | −0.0044 (6) | −0.0071 (7) |
| C11 | 0.0222 (7) | 0.0365 (9) | 0.0119 (7) | −0.0038 (7) | −0.0016 (5) | −0.0047 (7) |
| C12 | 0.0257 (8) | 0.0484 (11) | 0.0158 (7) | 0.0020 (8) | −0.0044 (6) | −0.0062 (8) |
| C13 | 0.0307 (9) | 0.0562 (13) | 0.0157 (8) | 0.0009 (8) | −0.0073 (6) | −0.0085 (8) |
| C14 | 0.0306 (9) | 0.0534 (12) | 0.0186 (8) | 0.0056 (8) | −0.0017 (7) | −0.0106 (8) |
| Ni1—N1i | 2.0559 (16) | C3—H3B | 0.9900 |
| Ni1—N1 | 2.0559 (16) | C4—C1i | 1.526 (3) |
| Ni1—N2 | 2.0720 (17) | C4—H4A | 0.9900 |
| Ni1—N2i | 2.0720 (17) | C4—H4B | 0.9900 |
| Ni1—O1i | 2.1371 (13) | C5—C6 | 1.523 (3) |
| Ni1—O1 | 2.1372 (13) | C5—H5A | 0.9900 |
| O1—C9 | 1.2669 (19) | C5—H5B | 0.9900 |
| O2—C9 | 1.248 (2) | C6—C7 | 1.521 (3) |
| N1—C1 | 1.471 (2) | C6—H6A | 0.9900 |
| N1—C2 | 1.481 (3) | C6—H6B | 0.9900 |
| N1—H1 | 1.0000 | C7—C8 | 1.521 (3) |
| N2—C4 | 1.477 (2) | C7—H7A | 0.9900 |
| N2—C3 | 1.481 (3) | C7—H7B | 0.9900 |
| N2—H2 | 1.0000 | C8—H8A | 0.9800 |
| N3—C3 | 1.440 (3) | C8—H8B | 0.9800 |
| N3—C2 | 1.444 (2) | C8—H8C | 0.9800 |
| N3—C5 | 1.471 (2) | C9—C11 | 1.516 (2) |
| N4—C13 | 1.336 (3) | C10—C14 | 1.384 (3) |
| N4—C14 | 1.340 (2) | C10—C11 | 1.386 (3) |
| C1—C4i | 1.526 (3) | C10—H10 | 0.9500 |
| C1—H1A | 0.9900 | C11—C12 | 1.393 (2) |
| C1—H1B | 0.9900 | C12—C13 | 1.379 (3) |
| C2—H2A | 0.9900 | C12—H12 | 0.9500 |
| C2—H2B | 0.9900 | C13—H13 | 0.9500 |
| C3—H3A | 0.9900 | C14—H14 | 0.9500 |
| N1i—Ni1—N1 | 180.0 | H3A—C3—H3B | 107.6 |
| N1i—Ni1—N2 | 85.97 (6) | N2—C4—C1i | 108.14 (15) |
| N1—Ni1—N2 | 94.03 (6) | N2—C4—H4A | 110.1 |
| N1i—Ni1—N2i | 94.03 (6) | C1i—C4—H4A | 110.1 |
| N1—Ni1—N2i | 85.97 (6) | N2—C4—H4B | 110.1 |
| N2—Ni1—N2i | 180.0 | C1i—C4—H4B | 110.1 |
| N1i—Ni1—O1i | 93.29 (6) | H4A—C4—H4B | 108.4 |
| N1—Ni1—O1i | 86.71 (6) | N3—C5—C6 | 112.79 (16) |
| N2—Ni1—O1i | 92.90 (6) | N3—C5—H5A | 109.0 |
| N2i—Ni1—O1i | 87.10 (6) | C6—C5—H5A | 109.0 |
| N1i—Ni1—O1 | 86.71 (6) | N3—C5—H5B | 109.0 |
| N1—Ni1—O1 | 93.29 (6) | C6—C5—H5B | 109.0 |
| N2—Ni1—O1 | 87.10 (6) | H5A—C5—H5B | 107.8 |
| N2i—Ni1—O1 | 92.90 (6) | C7—C6—C5 | 111.93 (17) |
| O1i—Ni1—O1 | 180.0 | C7—C6—H6A | 109.2 |
| C9—O1—Ni1 | 131.99 (12) | C5—C6—H6A | 109.2 |
| C1—N1—C2 | 114.34 (14) | C7—C6—H6B | 109.2 |
| C1—N1—Ni1 | 105.52 (11) | C5—C6—H6B | 109.2 |
| C2—N1—Ni1 | 112.75 (11) | H6A—C6—H6B | 107.9 |
| C1—N1—H1 | 108.0 | C8—C7—C6 | 111.81 (19) |
| C2—N1—H1 | 108.0 | C8—C7—H7A | 109.3 |
| Ni1—N1—H1 | 108.0 | C6—C7—H7A | 109.3 |
| C4—N2—C3 | 113.96 (15) | C8—C7—H7B | 109.3 |
| C4—N2—Ni1 | 104.76 (11) | C6—C7—H7B | 109.3 |
| C3—N2—Ni1 | 113.72 (11) | H7A—C7—H7B | 107.9 |
| C4—N2—H2 | 108.0 | C7—C8—H8A | 109.5 |
| C3—N2—H2 | 108.0 | C7—C8—H8B | 109.5 |
| Ni1—N2—H2 | 108.0 | H8A—C8—H8B | 109.5 |
| C3—N3—C2 | 115.84 (15) | C7—C8—H8C | 109.5 |
| C3—N3—C5 | 114.58 (15) | H8A—C8—H8C | 109.5 |
| C2—N3—C5 | 115.55 (16) | H8B—C8—H8C | 109.5 |
| C13—N4—C14 | 116.05 (17) | O2—C9—O1 | 126.88 (16) |
| N1—C1—C4i | 108.60 (14) | O2—C9—C11 | 117.12 (15) |
| N1—C1—H1A | 110.0 | O1—C9—C11 | 115.99 (16) |
| C4i—C1—H1A | 110.0 | C14—C10—C11 | 119.30 (17) |
| N1—C1—H1B | 110.0 | C14—C10—H10 | 120.4 |
| C4i—C1—H1B | 110.0 | C11—C10—H10 | 120.4 |
| H1A—C1—H1B | 108.4 | C10—C11—C12 | 117.25 (16) |
| N3—C2—N1 | 114.07 (15) | C10—C11—C9 | 122.61 (15) |
| N3—C2—H2A | 108.7 | C12—C11—C9 | 120.14 (16) |
| N1—C2—H2A | 108.7 | C13—C12—C11 | 119.15 (18) |
| N3—C2—H2B | 108.7 | C13—C12—H12 | 120.4 |
| N1—C2—H2B | 108.7 | C11—C12—H12 | 120.4 |
| H2A—C2—H2B | 107.6 | N4—C13—C12 | 124.30 (17) |
| N3—C3—N2 | 114.51 (16) | N4—C13—H13 | 117.8 |
| N3—C3—H3A | 108.6 | C12—C13—H13 | 117.8 |
| N2—C3—H3A | 108.6 | N4—C14—C10 | 123.94 (18) |
| N3—C3—H3B | 108.6 | N4—C14—H14 | 118.0 |
| N2—C3—H3B | 108.6 | C10—C14—H14 | 118.0 |
| C2—N1—C1—C4i | −166.23 (14) | C5—C6—C7—C8 | −177.2 (2) |
| Ni1—N1—C1—C4i | −41.74 (15) | Ni1—O1—C9—O2 | −15.1 (3) |
| C3—N3—C2—N1 | −72.6 (2) | Ni1—O1—C9—C11 | 164.15 (12) |
| C5—N3—C2—N1 | 65.5 (2) | C14—C10—C11—C12 | 0.4 (3) |
| C1—N1—C2—N3 | 179.49 (14) | C14—C10—C11—C9 | −179.18 (18) |
| Ni1—N1—C2—N3 | 58.94 (17) | O2—C9—C11—C10 | 179.64 (18) |
| C2—N3—C3—N2 | 70.3 (2) | O1—C9—C11—C10 | 0.3 (3) |
| C5—N3—C3—N2 | −68.2 (2) | O2—C9—C11—C12 | 0.1 (3) |
| C4—N2—C3—N3 | −175.30 (14) | O1—C9—C11—C12 | −179.24 (17) |
| Ni1—N2—C3—N3 | −55.32 (18) | C10—C11—C12—C13 | 0.3 (3) |
| C3—N2—C4—C1i | 167.84 (13) | C9—C11—C12—C13 | 179.86 (18) |
| Ni1—N2—C4—C1i | 42.93 (14) | C14—N4—C13—C12 | 0.4 (3) |
| C3—N3—C5—C6 | −160.49 (18) | C11—C12—C13—N4 | −0.7 (3) |
| C2—N3—C5—C6 | 60.9 (2) | C13—N4—C14—C10 | 0.4 (3) |
| N3—C5—C6—C7 | 178.71 (18) | C11—C10—C14—N4 | −0.8 (3) |
| H··· | ||||
| N1—H1···O2 | 1.00 | 1.98 | 2.892 (2) | 150 |
| N2—H2···N4ii | 1.00 | 2.23 | 3.143 (2) | 151 |