| Literature DB >> 26958375 |
Irina A Odarich1, Anna V Pavlishchuk2, Valentina A Kalibabchuk1, Matti Haukka3.
Abstract
The centrosymmetric binuclear complex, [Cu2(C2H2N2O4)(C10H8N2)2(C2H6OS)2](ClO4)2, contains two copper(II) ions, connected through an N-deprotonated oxalodi-hydroxamic acid dianion, two terminal 2,2'-bi-pyridine ligands, and two apically coordinating dimethylsulfoxide mol-ecules. Two non-coordinating perchlorate anions assure electrical neutrality. The copper(II) ions in the complex dication [Cu2(C10H8N2)2(μ-C2H2N2O4)(C2H6SO)2](2+) are in an O2N3 square-pyramidal donor environment, the Cu-Cu separation being 5.2949 (4) Å. Two hydroxamate groups in the deprotonated oxalodi-hydroxamic acid are located trans to one each other. In the crystal, O-H⋯O and C-H⋯O hydrogen bonds link the complex cations to the perchlorate anions. Further C-H⋯O hydrogen bonds combine with π-π contacts with a centroid-to-centroid separation of 3.6371 (12) Å to stack the mol-ecules along the a-axis direction.Entities:
Keywords: Cu(II) complex; crystal structure; oxalodihydroxamic acid
Year: 2016 PMID: 26958375 PMCID: PMC4770973 DOI: 10.1107/S2056989016000050
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The crystal structure of complex (I), showing the atom labeling. Displacement ellipsoids are drawn at the 50% probability level.
Selected geometric parameters (Å, °)
| Cu1—O1 | 1.9848 (16) | Cu1—O2 | 2.2516 (16) |
| Cu1—N2 | 1.985 (2) | O1—C11 | 1.286 (3) |
| Cu1—N3i | 1.986 (2) | O5—N3 | 1.404 (3) |
| Cu1—N1 | 1.9966 (19) | ||
| O1—Cu1—N2 | 90.36 (7) | O1—Cu1—O2 | 98.04 (6) |
| O1—Cu1—N3i | 82.73 (7) | N2—Cu1—O2 | 97.53 (7) |
| N2—Cu1—N1 | 81.76 (8) | N3i—Cu1—O2 | 96.15 (7) |
| N3i—Cu1—N1 | 103.13 (8) | N1—Cu1—O2 | 90.72 (7) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O5—H5 | 0.92 (5) | 2.12 (5) | 2.912 (3) | 144 (4) |
| C4—H4⋯O2ii | 0.95 | 2.42 | 3.359 (3) | 171 |
| C7—H7⋯O2ii | 0.95 | 2.31 | 3.226 (3) | 162 |
| C3—H3⋯O7iii | 0.95 | 2.50 | 3.239 (3) | 134 |
| C13—H13 | 0.98 | 2.56 | 3.409 (3) | 145 |
| C13—H13 | 0.98 | 2.48 | 3.346 (3) | 148 |
| C13—H13 | 0.98 | 2.65 | 3.442 (3) | 138 |
| C12—H12 | 0.98 | 2.36 | 3.175 (3) | 140 |
| C8—H8⋯O9ii | 0.95 | 2.56 | 3.462 (3) | 159 |
| C12—H12 | 0.98 | 2.59 | 3.470 (3) | 150 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Figure 2The crystal packing of complex (I).
Experimental details
| Crystal data | |
| Chemical formula | [Cu2(C2H2N2O4)(C10H8N2)2(C2H6OS)2](ClO4)2 |
|
| 912.66 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 7.3641 (2), 10.3759 (5), 12.1358 (5) |
| α, β, γ (°) | 68.853 (2), 84.803 (3), 87.825 (3) |
|
| 861.27 (6) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 1.59 |
| Crystal size (mm) | 0.13 × 0.12 × 0.12 |
| Data collection | |
| Diffractometer | Nonius KappaCCD |
| Absorption correction | Multi-scan ( |
|
| 0.789, 0.835 |
| No. of measured, independent and observed [ | 18205, 3943, 3351 |
|
| 0.039 |
| (sin θ/λ)max (Å−1) | 0.649 |
| Refinement | |
|
| 0.034, 0.087, 1.11 |
| No. of reflections | 3943 |
| No. of parameters | 241 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.74, −0.55 |
Computer programs: COLLECT (Bruker, 2004 ▸), DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014/7 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).
| [Cu2(C2H2N2O4)(C10H8N2)2(C2H6OS)2](ClO4)2 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 26719 reflections | |
| θ = 1.0–27.5° | |
| α = 68.853 (2)° | µ = 1.59 mm−1 |
| β = 84.803 (3)° | |
| γ = 87.825 (3)° | Block, pale blue |
| 0.13 × 0.12 × 0.12 mm |
| Nonius KappaCCD diffractometer | 3351 reflections with |
| Radiation source: fine-focus sealed tube | |
| ω scans | θmax = 27.5°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 18205 measured reflections | |
| 3943 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3943 reflections | Δρmax = 0.74 e Å−3 |
| 241 parameters | Δρmin = −0.55 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Cu1 | 0.81268 (4) | 0.11133 (3) | 0.38671 (2) | 0.01840 (10) | |
| Cl1 | 0.71265 (8) | −0.30071 (6) | 0.19039 (5) | 0.02481 (14) | |
| S1 | 0.85060 (7) | 0.28499 (6) | 0.10324 (5) | 0.01997 (14) | |
| O1 | 0.6724 (2) | −0.05948 (17) | 0.41752 (15) | 0.0210 (3) | |
| O2 | 0.7106 (2) | 0.23761 (17) | 0.21002 (14) | 0.0221 (4) | |
| O5 | 0.4262 (2) | −0.26749 (18) | 0.48100 (16) | 0.0243 (4) | |
| H5O | 0.528 (6) | −0.253 (5) | 0.428 (4) | 0.083 (14)* | |
| O6 | 0.6917 (3) | −0.3371 (2) | 0.31798 (18) | 0.0383 (5) | |
| O7 | 0.5444 (3) | −0.3243 (2) | 0.1500 (2) | 0.0423 (5) | |
| O8 | 0.8557 (3) | −0.3841 (2) | 0.16071 (18) | 0.0344 (4) | |
| O9 | 0.7598 (3) | −0.15753 (19) | 0.13534 (19) | 0.0365 (5) | |
| N1 | 0.9922 (3) | 0.2580 (2) | 0.36990 (17) | 0.0192 (4) | |
| N2 | 1.0297 (3) | 0.0299 (2) | 0.32626 (17) | 0.0192 (4) | |
| N3 | 0.3959 (3) | −0.1523 (2) | 0.51515 (17) | 0.0192 (4) | |
| C1 | 0.9598 (3) | 0.3726 (3) | 0.3950 (2) | 0.0238 (5) | |
| H1 | 0.8409 | 0.3883 | 0.4252 | 0.029* | |
| C2 | 1.0948 (3) | 0.4694 (3) | 0.3781 (2) | 0.0255 (5) | |
| H2 | 1.0683 | 0.5499 | 0.3967 | 0.031* | |
| C3 | 1.2673 (3) | 0.4473 (3) | 0.3342 (2) | 0.0257 (5) | |
| H3 | 1.3624 | 0.5108 | 0.3248 | 0.031* | |
| C4 | 1.3010 (3) | 0.3309 (2) | 0.3038 (2) | 0.0222 (5) | |
| H4 | 1.4180 | 0.3153 | 0.2708 | 0.027* | |
| C5 | 1.1604 (3) | 0.2381 (2) | 0.3224 (2) | 0.0199 (5) | |
| C6 | 1.1790 (3) | 0.1118 (2) | 0.2922 (2) | 0.0203 (5) | |
| C7 | 1.3330 (3) | 0.0781 (3) | 0.2340 (2) | 0.0241 (5) | |
| H7 | 1.4356 | 0.1376 | 0.2100 | 0.029* | |
| C8 | 1.3359 (3) | −0.0434 (3) | 0.2112 (2) | 0.0261 (5) | |
| H8 | 1.4398 | −0.0679 | 0.1705 | 0.031* | |
| C9 | 1.1844 (3) | −0.1290 (3) | 0.2487 (2) | 0.0249 (5) | |
| H9 | 1.1846 | −0.2140 | 0.2358 | 0.030* | |
| C10 | 1.0341 (3) | −0.0888 (2) | 0.3050 (2) | 0.0231 (5) | |
| H10 | 0.9300 | −0.1469 | 0.3295 | 0.028* | |
| C11 | 0.5220 (3) | −0.0590 (2) | 0.4801 (2) | 0.0183 (5) | |
| C12 | 0.8329 (4) | 0.1655 (3) | 0.0300 (2) | 0.0290 (6) | |
| H12A | 0.8580 | 0.0719 | 0.0845 | 0.044* | |
| H12B | 0.9215 | 0.1893 | −0.0395 | 0.044* | |
| H12C | 0.7095 | 0.1696 | 0.0047 | 0.044* | |
| C13 | 0.7529 (4) | 0.4328 (3) | −0.0024 (2) | 0.0266 (5) | |
| H13A | 0.6320 | 0.4095 | −0.0173 | 0.040* | |
| H13B | 0.8315 | 0.4622 | −0.0766 | 0.040* | |
| H13C | 0.7414 | 0.5081 | 0.0286 | 0.040* |
| Cu1 | 0.01496 (15) | 0.02100 (16) | 0.01911 (16) | −0.00278 (10) | 0.00203 (10) | −0.00758 (12) |
| Cl1 | 0.0209 (3) | 0.0239 (3) | 0.0307 (3) | −0.0023 (2) | 0.0016 (2) | −0.0117 (2) |
| S1 | 0.0164 (3) | 0.0234 (3) | 0.0179 (3) | −0.0026 (2) | 0.0010 (2) | −0.0050 (2) |
| O1 | 0.0169 (8) | 0.0230 (8) | 0.0234 (9) | −0.0041 (6) | 0.0043 (6) | −0.0097 (7) |
| O2 | 0.0165 (8) | 0.0291 (9) | 0.0187 (8) | −0.0036 (7) | 0.0033 (6) | −0.0069 (7) |
| O5 | 0.0229 (9) | 0.0232 (9) | 0.0297 (10) | −0.0029 (7) | 0.0045 (7) | −0.0143 (8) |
| O6 | 0.0423 (12) | 0.0437 (12) | 0.0292 (10) | 0.0059 (9) | 0.0046 (9) | −0.0157 (9) |
| O7 | 0.0267 (10) | 0.0498 (13) | 0.0519 (13) | −0.0114 (9) | −0.0070 (9) | −0.0181 (11) |
| O8 | 0.0354 (11) | 0.0327 (10) | 0.0356 (11) | 0.0075 (8) | 0.0041 (8) | −0.0153 (9) |
| O9 | 0.0344 (11) | 0.0241 (10) | 0.0488 (13) | −0.0064 (8) | 0.0063 (9) | −0.0120 (9) |
| N1 | 0.0182 (9) | 0.0218 (10) | 0.0167 (9) | −0.0023 (7) | 0.0003 (7) | −0.0061 (8) |
| N2 | 0.0169 (9) | 0.0204 (10) | 0.0195 (10) | −0.0008 (7) | −0.0016 (8) | −0.0062 (8) |
| N3 | 0.0190 (10) | 0.0186 (9) | 0.0207 (10) | −0.0015 (7) | 0.0004 (8) | −0.0083 (8) |
| C1 | 0.0218 (12) | 0.0263 (13) | 0.0236 (12) | −0.0007 (9) | 0.0007 (10) | −0.0099 (10) |
| C2 | 0.0274 (13) | 0.0210 (12) | 0.0271 (13) | −0.0035 (10) | 0.0017 (10) | −0.0082 (10) |
| C3 | 0.0254 (13) | 0.0233 (12) | 0.0264 (13) | −0.0074 (10) | −0.0024 (10) | −0.0057 (10) |
| C4 | 0.0175 (11) | 0.0247 (12) | 0.0214 (12) | −0.0029 (9) | 0.0001 (9) | −0.0050 (10) |
| C5 | 0.0189 (11) | 0.0239 (12) | 0.0153 (11) | 0.0005 (9) | −0.0026 (9) | −0.0050 (9) |
| C6 | 0.0179 (11) | 0.0229 (12) | 0.0187 (11) | −0.0020 (9) | −0.0012 (9) | −0.0058 (9) |
| C7 | 0.0173 (11) | 0.0294 (13) | 0.0236 (13) | −0.0014 (9) | 0.0000 (9) | −0.0075 (10) |
| C8 | 0.0210 (12) | 0.0315 (13) | 0.0255 (13) | 0.0029 (10) | 0.0026 (10) | −0.0113 (11) |
| C9 | 0.0264 (13) | 0.0253 (13) | 0.0248 (13) | 0.0029 (10) | −0.0018 (10) | −0.0115 (10) |
| C10 | 0.0224 (12) | 0.0225 (12) | 0.0240 (12) | −0.0004 (9) | −0.0026 (10) | −0.0076 (10) |
| C11 | 0.0179 (11) | 0.0195 (11) | 0.0164 (11) | −0.0001 (9) | −0.0019 (9) | −0.0051 (9) |
| C12 | 0.0349 (14) | 0.0279 (13) | 0.0244 (13) | −0.0011 (11) | 0.0054 (11) | −0.0114 (11) |
| C13 | 0.0306 (13) | 0.0220 (12) | 0.0243 (13) | 0.0015 (10) | −0.0041 (10) | −0.0046 (10) |
| Cu1—O1 | 1.9848 (16) | C2—C3 | 1.376 (4) |
| Cu1—N2 | 1.985 (2) | C2—H2 | 0.9500 |
| Cu1—N3i | 1.986 (2) | C3—C4 | 1.393 (4) |
| Cu1—N1 | 1.9966 (19) | C3—H3 | 0.9500 |
| Cu1—O2 | 2.2516 (16) | C4—C5 | 1.388 (3) |
| Cl1—O9 | 1.4336 (19) | C4—H4 | 0.9500 |
| Cl1—O7 | 1.4339 (19) | C5—C6 | 1.481 (3) |
| Cl1—O8 | 1.4401 (19) | C6—C7 | 1.382 (3) |
| Cl1—O6 | 1.450 (2) | C7—C8 | 1.384 (4) |
| S1—O2 | 1.5234 (17) | C7—H7 | 0.9500 |
| S1—C12 | 1.781 (3) | C8—C9 | 1.390 (4) |
| S1—C13 | 1.783 (2) | C8—H8 | 0.9500 |
| O1—C11 | 1.286 (3) | C9—C10 | 1.378 (4) |
| O5—N3 | 1.404 (3) | C9—H9 | 0.9500 |
| O5—H5O | 0.92 (5) | C10—H10 | 0.9500 |
| N1—C1 | 1.338 (3) | C11—C11i | 1.486 (5) |
| N1—C5 | 1.359 (3) | C12—H12A | 0.9800 |
| N2—C10 | 1.345 (3) | C12—H12B | 0.9800 |
| N2—C6 | 1.355 (3) | C12—H12C | 0.9800 |
| N3—C11 | 1.296 (3) | C13—H13A | 0.9800 |
| N3—Cu1i | 1.986 (2) | C13—H13B | 0.9800 |
| C1—C2 | 1.389 (3) | C13—H13C | 0.9800 |
| C1—H1 | 0.9500 | ||
| O1—Cu1—N2 | 90.36 (7) | C2—C3—H3 | 120.4 |
| O1—Cu1—N3i | 82.73 (7) | C4—C3—H3 | 120.4 |
| N2—Cu1—N3i | 165.41 (8) | C5—C4—C3 | 118.8 (2) |
| O1—Cu1—N1 | 168.93 (7) | C5—C4—H4 | 120.6 |
| N2—Cu1—N1 | 81.76 (8) | C3—C4—H4 | 120.6 |
| N3i—Cu1—N1 | 103.13 (8) | N1—C5—C4 | 121.6 (2) |
| O1—Cu1—O2 | 98.04 (6) | N1—C5—C6 | 114.7 (2) |
| N2—Cu1—O2 | 97.53 (7) | C4—C5—C6 | 123.7 (2) |
| N3i—Cu1—O2 | 96.15 (7) | N2—C6—C7 | 121.8 (2) |
| N1—Cu1—O2 | 90.72 (7) | N2—C6—C5 | 114.2 (2) |
| O9—Cl1—O7 | 109.44 (13) | C7—C6—C5 | 124.1 (2) |
| O9—Cl1—O8 | 109.53 (12) | C6—C7—C8 | 119.1 (2) |
| O7—Cl1—O8 | 110.04 (13) | C6—C7—H7 | 120.4 |
| O9—Cl1—O6 | 109.19 (13) | C8—C7—H7 | 120.4 |
| O7—Cl1—O6 | 109.47 (13) | C7—C8—C9 | 119.0 (2) |
| O8—Cl1—O6 | 109.16 (12) | C7—C8—H8 | 120.5 |
| O2—S1—C12 | 105.19 (11) | C9—C8—H8 | 120.5 |
| O2—S1—C13 | 105.82 (11) | C10—C9—C8 | 119.1 (2) |
| C12—S1—C13 | 98.84 (13) | C10—C9—H9 | 120.5 |
| C11—O1—Cu1 | 110.68 (14) | C8—C9—H9 | 120.5 |
| S1—O2—Cu1 | 117.43 (9) | N2—C10—C9 | 122.2 (2) |
| N3—O5—H5O | 110 (3) | N2—C10—H10 | 118.9 |
| C1—N1—C5 | 119.0 (2) | C9—C10—H10 | 118.9 |
| C1—N1—Cu1 | 126.77 (16) | O1—C11—N3 | 127.6 (2) |
| C5—N1—Cu1 | 114.11 (16) | O1—C11—C11i | 119.6 (2) |
| C10—N2—C6 | 118.8 (2) | N3—C11—C11i | 112.8 (2) |
| C10—N2—Cu1 | 126.04 (16) | S1—C12—H12A | 109.5 |
| C6—N2—Cu1 | 114.74 (16) | S1—C12—H12B | 109.5 |
| C11—N3—O5 | 116.51 (19) | H12A—C12—H12B | 109.5 |
| C11—N3—Cu1i | 114.16 (16) | S1—C12—H12C | 109.5 |
| O5—N3—Cu1i | 129.32 (14) | H12A—C12—H12C | 109.5 |
| N1—C1—C2 | 122.0 (2) | H12B—C12—H12C | 109.5 |
| N1—C1—H1 | 119.0 | S1—C13—H13A | 109.5 |
| C2—C1—H1 | 119.0 | S1—C13—H13B | 109.5 |
| C3—C2—C1 | 119.3 (2) | H13A—C13—H13B | 109.5 |
| C3—C2—H2 | 120.4 | S1—C13—H13C | 109.5 |
| C1—C2—H2 | 120.4 | H13A—C13—H13C | 109.5 |
| C2—C3—C4 | 119.2 (2) | H13B—C13—H13C | 109.5 |
| H··· | ||||
| O5—H5 | 0.92 (5) | 2.12 (5) | 2.912 (3) | 144 (4) |
| C4—H4···O2ii | 0.95 | 2.42 | 3.359 (3) | 171 |
| C7—H7···O2ii | 0.95 | 2.31 | 3.226 (3) | 162 |
| C3—H3···O7iii | 0.95 | 2.50 | 3.239 (3) | 134 |
| C13—H13 | 0.98 | 2.56 | 3.409 (3) | 145 |
| C13—H13 | 0.98 | 2.48 | 3.346 (3) | 148 |
| C13—H13 | 0.98 | 2.65 | 3.442 (3) | 138 |
| C12—H12 | 0.98 | 2.36 | 3.175 (3) | 140 |
| C8—H8···O9ii | 0.95 | 2.56 | 3.462 (3) | 159 |
| C12—H12 | 0.98 | 2.59 | 3.470 (3) | 150 |