Literature DB >> 26957645

Fully reduced granulin-B is intrinsically disordered and displays concentration-dependent dynamics.

Gaurav Ghag1, Lauren M Wolf2, Randi G Reed1, Nicholas P Van Der Munnik3, Claudius Mundoma4, Melissa A Moss5, Vijayaraghavan Rangachari6.   

Abstract

Granulins (Grns) are a family of small, cysteine-rich proteins that are generated upon proteolytic cleavage of their precursor, progranulin (Pgrn). All seven Grns (A-G) contain 12 conserved cysteines that form 6 intramolecular disulfide bonds, rendering this family of proteins unique. Grns are known to play multi-functional roles, including wound healing, embryonic growth, and inflammation and are implicated in neurodegenerative diseases. Despite their manifold functions, there exists a dearth of information regarding their structure-function relationship. Here, we sought to establish the role of disulfide bonds in promoting structure by investigating the fully reduced GrnB (rGrnB). We report that monomeric rGrnB is an intrinsically disordered protein (IDP) at low concentrations. rGrnB undergoes dimerization at higher concentrations to form a fuzzy complex without a net gain in the structure-a behavior increasingly identified as a hallmark of some IDPs. Interestingly, we show that rGrnB is also able to activate NF-κB in human neuroblastoma cells in a concentration-dependent manner. This activation correlates with the observed monomer-dimer dynamics. Collectively, the presented data establish that the intrinsic disorder of rGrnB governs conformational dynamics within the reduced form of the protein, and suggest that the overall structure of Grns could be entirely dictated by disulfide bonds.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  cysteine-rich protein; fuzzy complex; granulin; intrinsically disordered protein; progranulin

Mesh:

Substances:

Year:  2016        PMID: 26957645      PMCID: PMC4830411          DOI: 10.1093/protein/gzw005

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  36 in total

Review 1.  Fuzzy complexes: a more stochastic view of protein function.

Authors:  Monika Fuxreiter; Peter Tompa
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 2.  Fuzzy complexes of myelin basic protein: NMR spectroscopic investigations of a polymorphic organizational linker of the central nervous system.

Authors:  David S Libich; Mumdooh A M Ahmed; Ligang Zhong; Vladimir V Bamm; Vladimir Ladizhansky; George Harauz
Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

3.  Cellular localization of gene expression for progranulin.

Authors:  R Daniel; Z He; K P Carmichael; J Halper; A Bateman
Journal:  J Histochem Cytochem       Date:  2000-07       Impact factor: 2.479

4.  NIH Image to ImageJ: 25 years of image analysis.

Authors:  Caroline A Schneider; Wayne S Rasband; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-07       Impact factor: 28.547

5.  The acidic transcription activator Gcn4 binds the mediator subunit Gal11/Med15 using a simple protein interface forming a fuzzy complex.

Authors:  Peter S Brzovic; Clemens C Heikaus; Leonid Kisselev; Robert Vernon; Eric Herbig; Derek Pacheco; Linda Warfield; Peter Littlefield; David Baker; Rachel E Klevit; Steven Hahn
Journal:  Mol Cell       Date:  2011-12-23       Impact factor: 17.970

6.  Design and solution structure of a well-folded stack of two beta-hairpins based on the amino-terminal fragment of human granulin A.

Authors:  D Tolkatchev; A Ng; W Vranken; F Ni
Journal:  Biochemistry       Date:  2000-03-21       Impact factor: 3.162

Review 7.  Fuzziness: linking regulation to protein dynamics.

Authors:  Monika Fuxreiter
Journal:  Mol Biosyst       Date:  2011-09-19

Review 8.  TDP-43 in central nervous system development and function: clues to TDP-43-associated neurodegeneration.

Authors:  Chantelle F Sephton; Basar Cenik; Bercin Kutluk Cenik; Joachim Herz; Gang Yu
Journal:  Biol Chem       Date:  2012-07       Impact factor: 3.915

Review 9.  The genetics and neuropathology of frontotemporal lobar degeneration.

Authors:  Anne Sieben; Tim Van Langenhove; Sebastiaan Engelborghs; Jean-Jacques Martin; Paul Boon; Patrick Cras; Peter-Paul De Deyn; Patrick Santens; Christine Van Broeckhoven; Marc Cruts
Journal:  Acta Neuropathol       Date:  2012-08-14       Impact factor: 17.088

Review 10.  A decade and a half of protein intrinsic disorder: biology still waits for physics.

Authors:  Vladimir N Uversky
Journal:  Protein Sci       Date:  2013-04-29       Impact factor: 6.725

View more
  8 in total

1.  Structure dissection of zebrafish progranulins identifies a well-folded granulin/epithelin module protein with pro-cell survival activities.

Authors:  Ping Wang; Babykumari Chitramuthu; Andrew Bateman; Hugh P J Bennett; Ping Xu; Feng Ni
Journal:  Protein Sci       Date:  2018-07-18       Impact factor: 6.725

2.  Disorder and cysteines in proteins: A design for orchestration of conformational see-saw and modulatory functions.

Authors:  Anukool A Bhopatkar; Vladimir N Uversky; Vijayaraghavan Rangachari
Journal:  Prog Mol Biol Transl Sci       Date:  2020-06-27       Impact factor: 3.622

3.  Granulins modulate liquid-liquid phase separation and aggregation of the prion-like C-terminal domain of the neurodegeneration-associated protein TDP-43.

Authors:  Anukool A Bhopatkar; Vladimir N Uversky; Vijayaraghavan Rangachari
Journal:  J Biol Chem       Date:  2020-01-06       Impact factor: 5.157

4.  Cysteine-rich granulin-3 rapidly promotes amyloid-β fibrils in both redox states.

Authors:  Anukool A Bhopatkar; Gaurav Ghag; Lauren M Wolf; Dexter N Dean; Melissa A Moss; Vijayaraghavan Rangachari
Journal:  Biochem J       Date:  2019-03-12       Impact factor: 3.857

5.  Disulfide bonds and disorder in granulin-3: An unusual handshake between structural stability and plasticity.

Authors:  Gaurav Ghag; Christopher J Holler; Georgia Taylor; Thomas L Kukar; Vladimir N Uversky; Vijayaraghavan Rangachari
Journal:  Protein Sci       Date:  2017-06-22       Impact factor: 6.725

6.  Are granulins copper sequestering proteins?

Authors:  Anukool A Bhopatkar; Vijayaraghavan Rangachari
Journal:  Proteins       Date:  2020-12-09

Review 7.  Fatal Attraction: The Case of Toxic Soluble Dimers of Truncated PQBP-1 Mutants in X-Linked Intellectual Disability.

Authors:  Yu Wai Chen; Shah Kamranur Rahman
Journal:  Int J Mol Sci       Date:  2021-02-24       Impact factor: 5.923

8.  Folding of Truncated Granulin Peptides.

Authors:  Rozita Takjoo; David Wilson; Paramjit S Bansal; Alex Loukas; Michael J Smout; Norelle L Daly
Journal:  Biomolecules       Date:  2020-08-06
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.