Literature DB >> 26953598

Beyond the Black Queen Hypothesis.

Alix Mas1, Shahrad Jamshidi2, Yvan Lagadeuc1, Damien Eveillard2, Philippe Vandenkoornhuyse1.   

Abstract

The Black Queen Hypothesis, recently proposed to explain an evolution of dependency based on gene loss, is gaining ground. This paper focuses on how the evolution of dependency transforms interactions and the community. Using agent-based modeling we suggest that species specializing in the consumption of a common good escape competition and therefore favor coexistence. This evolutionary trajectory could open the way for novel long-lasting interactions and a need to revisit the classically accepted assembly rules. Such evolutionary events also reshape the structure and dynamics of communities, depending on the spatial heterogeneity of the common good production. Let Black be the new black!

Mesh:

Year:  2016        PMID: 26953598      PMCID: PMC4989313          DOI: 10.1038/ismej.2016.22

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  40 in total

Review 1.  Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis.

Authors:  H Ochman; N A Moran
Journal:  Science       Date:  2001-05-11       Impact factor: 47.728

Review 2.  Extreme genome reduction in symbiotic bacteria.

Authors:  John P McCutcheon; Nancy A Moran
Journal:  Nat Rev Microbiol       Date:  2011-11-08       Impact factor: 60.633

3.  A resource ratio theory of cooperation.

Authors:  Claire de Mazancourt; Mark W Schwartz
Journal:  Ecol Lett       Date:  2010-03       Impact factor: 9.492

4.  The evolution of groups of cooperating bacteria and the growth rate versus yield trade-off.

Authors:  Jan-Ulrich Kreft; Sebastian Bonhoeffer
Journal:  Microbiology (Reading)       Date:  2005-03       Impact factor: 2.777

Review 5.  Relaxed selection in the wild.

Authors:  David C Lahti; Norman A Johnson; Beverly C Ajie; Sarah P Otto; Andrew P Hendry; Daniel T Blumstein; Richard G Coss; Kathleen Donohue; Susan A Foster
Journal:  Trends Ecol Evol       Date:  2009-06-06       Impact factor: 17.712

6.  Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria.

Authors:  Samay Pande; Holger Merker; Katrin Bohl; Michael Reichelt; Stefan Schuster; Luís F de Figueiredo; Christoph Kaleta; Christian Kost
Journal:  ISME J       Date:  2013-11-28       Impact factor: 10.302

7.  Coexistence of evolving bacteria stabilized by a shared Black Queen function.

Authors:  J Jeffrey Morris; Spiridon E Papoulis; Richard E Lenski
Journal:  Evolution       Date:  2014-08-01       Impact factor: 3.694

Review 8.  Implications of streamlining theory for microbial ecology.

Authors:  Stephen J Giovannoni; J Cameron Thrash; Ben Temperton
Journal:  ISME J       Date:  2014-04-17       Impact factor: 10.302

9.  From metabolism to ecology: cross-feeding interactions shape the balance between polymicrobial conflict and mutualism.

Authors:  Sylvie Estrela; Christopher H Trisos; Sam P Brown
Journal:  Am Nat       Date:  2012-09-28       Impact factor: 3.926

10.  Metabolic pathways for the whole community.

Authors:  Niels W Hanson; Kishori M Konwar; Alyse K Hawley; Tomer Altman; Peter D Karp; Steven J Hallam
Journal:  BMC Genomics       Date:  2014-07-22       Impact factor: 3.969

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  34 in total

1.  Maintenance of Microbial Cooperation Mediated by Public Goods in Single- and Multiple-Trait Scenarios

Authors:  Özhan Özkaya; Karina B Xavier; Francisco Dionisio; Roberto Balbontín
Journal:  J Bacteriol       Date:  2017-08-28       Impact factor: 3.490

2.  Marine microbiology: Roommates in space and time.

Authors:  Meinhard Simon
Journal:  Nat Microbiol       Date:  2017-08-24       Impact factor: 17.745

3.  Market forces determine the distribution of a leaky function in a simple microbial community.

Authors:  Sarah J Adkins-Jablonsky; Colleen M Clark; Spiridon E Papoulis; Matthew D Kuhl; J Jeffrey Morris
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-28       Impact factor: 11.205

4.  Heterotrophic Bacteria Dominate Catalase Expression during Microcystis Blooms.

Authors:  Derek J Smith; Michelle A Berry; Rose M Cory; Thomas H Johengen; George W Kling; Timothy W Davis; Gregory J Dick
Journal:  Appl Environ Microbiol       Date:  2022-07-05       Impact factor: 5.005

5.  Metabolic adaptation to vitamin auxotrophy by leaf-associated bacteria.

Authors:  Birgitta Ryback; Miriam Bortfeld-Miller; Julia A Vorholt
Journal:  ISME J       Date:  2022-08-20       Impact factor: 11.217

6.  Microbial generalists and specialists differently contribute to the community diversity in farmland soils.

Authors:  Qicheng Xu; Philippe Vandenkoornhuyse; Ling Li; Junjie Guo; Chen Zhu; Shiwei Guo; Ning Ling; Qirong Shen
Journal:  J Adv Res       Date:  2021-12-15       Impact factor: 12.822

7.  Dynamic character displacement among a pair of bacterial phyllosphere commensals in situ.

Authors:  Lucas Hemmerle; Benjamin A Maier; Miriam Bortfeld-Miller; Birgitta Ryback; Christoph G Gäbelein; Martin Ackermann; Julia A Vorholt
Journal:  Nat Commun       Date:  2022-05-20       Impact factor: 17.694

8.  Community Interaction Co-limitation: Nutrient Limitation in a Marine Microbial Community Context.

Authors:  Catherine Bannon; Insa Rapp; Erin M Bertrand
Journal:  Front Microbiol       Date:  2022-05-25       Impact factor: 6.064

9.  Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes.

Authors:  Yusuke Okazaki; Shohei Fujinaga; Atsushi Tanaka; Ayato Kohzu; Hideo Oyagi; Shin-Ichi Nakano
Journal:  ISME J       Date:  2017-06-06       Impact factor: 10.302

10.  The Exometabolome of Two Model Strains of the Roseobacter Group: A Marketplace of Microbial Metabolites.

Authors:  Gerrit Wienhausen; Beatriz E Noriega-Ortega; Jutta Niggemann; Thorsten Dittmar; Meinhard Simon
Journal:  Front Microbiol       Date:  2017-10-12       Impact factor: 5.640

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