Literature DB >> 26943560

Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation.

Erik van Dijk1,2, Patrick Varilly1, Tuomas P J Knowles1, Daan Frenkel1, Sanne Abeln2.   

Abstract

The hydrophobic effect stabilizes the native structure of proteins by minimizing the unfavorable interactions between hydrophobic residues and water through the formation of a hydrophobic core. Here, we include the entropic and enthalpic contributions of the hydrophobic effect explicitly in an implicit solvent model. This allows us to capture two important effects: a length-scale dependence and a temperature dependence for the solvation of a hydrophobic particle. This consistent treatment of the hydrophobic effect explains cold denaturation and heat capacity measurements of solvated proteins.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26943560     DOI: 10.1103/PhysRevLett.116.078101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  4 in total

1.  Computational investigation of cold denaturation in the Trp-cage miniprotein.

Authors:  Sang Beom Kim; Jeremy C Palmer; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205

Review 2.  Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties.

Authors:  Gregory L Dignon; Robert B Best; Jeetain Mittal
Journal:  Annu Rev Phys Chem       Date:  2020-04-20       Impact factor: 12.703

3.  A Tale of Two Desolvation Potentials: An Investigation of Protein Behavior under High Hydrostatic Pressure.

Authors:  Andrei G Gasic; Margaret S Cheung
Journal:  J Phys Chem B       Date:  2020-02-24       Impact factor: 2.991

4.  The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth.

Authors:  Juami Hermine Mariama van Gils; Erik van Dijk; Alessia Peduzzo; Alexander Hofmann; Nicola Vettore; Marie P Schützmann; Georg Groth; Halima Mouhib; Daniel E Otzen; Alexander K Buell; Sanne Abeln
Journal:  PLoS Comput Biol       Date:  2020-05-04       Impact factor: 4.475

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.