Literature DB >> 26942688

Bacterial chromatin: converging views at different scales.

Remus T Dame1, Mariliis Tark-Dame2.   

Abstract

Bacterial genomes are functionally organized and compactly folded into a structure referred to as bacterial chromatin or the nucleoid. An important role in genome folding is attributed to Nucleoid-Associated Proteins, also referred to as bacterial chromatin proteins. Although a lot of molecular insight in the mechanisms of operation of these proteins has been generated in the test tube, knowledge on genome organization in the cellular context is still lagging behind severely. Here, we discuss important advances in the understanding of three-dimensional genome organization due to the application of Chromosome Conformation Capture and super-resolution microscopy techniques. We focus on bacterial chromatin proteins whose proposed role in genome organization is supported by these approaches. Moreover, we discuss recent insights into the interrelationship between genome organization and genome activity/stability in bacteria.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26942688     DOI: 10.1016/j.ceb.2016.02.015

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  25 in total

Review 1.  The loading of condensin in the context of chromatin.

Authors:  Xavier Robellet; Vincent Vanoosthuyse; Pascal Bernard
Journal:  Curr Genet       Date:  2016-12-01       Impact factor: 3.886

Review 2.  Transcription of Bacterial Chromatin.

Authors:  Beth A Shen; Robert Landick
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

3.  Phosphorothioated DNA Is Shielded from Oxidative Damage.

Authors:  Tianning Pu; Jingdan Liang; Zhiling Mei; Yan Yang; Jialiang Wang; Wei Zhang; Wei-Jun Liang; Xiufen Zhou; Zixin Deng; Zhijun Wang
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

Review 4.  Optical and force nanoscopy in microbiology.

Authors:  Jie Xiao; Yves F Dufrêne
Journal:  Nat Microbiol       Date:  2016-10-26       Impact factor: 17.745

Review 5.  Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology.

Authors:  Indra Bervoets; Daniel Charlier
Journal:  FEMS Microbiol Rev       Date:  2019-05-01       Impact factor: 16.408

Review 6.  Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom.

Authors:  Haley M Amemiya; Jeremy Schroeder; Peter L Freddolino
Journal:  Transcription       Date:  2021-09-09

7.  Lattice Models of Bacterial Nucleoids.

Authors:  David S Goodsell; Ludovic Autin; Arthur J Olson
Journal:  J Phys Chem B       Date:  2018-01-25       Impact factor: 2.991

Review 8.  Subcellular Organization: A Critical Feature of Bacterial Cell Replication.

Authors:  Ivan V Surovtsev; Christine Jacobs-Wagner
Journal:  Cell       Date:  2018-03-08       Impact factor: 41.582

Review 9.  DNA Replication in Mycobacterium tuberculosis.

Authors:  Zanele Ditse; Meindert H Lamers; Digby F Warner
Journal:  Microbiol Spectr       Date:  2017-03

10.  Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps.

Authors:  Benjamin R Gilbert; Zane R Thornburg; Vinson Lam; Fatema-Zahra M Rashid; John I Glass; Elizabeth Villa; Remus T Dame; Zaida Luthey-Schulten
Journal:  Front Mol Biosci       Date:  2021-07-22
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