Literature DB >> 26940584

Disease-drug database for pharmacogenomic-based prescribing.

S Hussain1, B B Kenigsberg2, K Danahey1,3, Y M Lee4, P M Galecki1, M J Ratain1,4,5, P H O'Donnell1,4,5.   

Abstract

Providers have expressed a strong desire to have additional clinical decision-support tools to help with interpretation of pharmacogenomic results. We developed and tested a novel disease-drug association tool that enables pharmacogenomic-based prescribing to treat common diseases. First, 324 drugs were mapped to 484 distinct diseases (mean number of drugs treating each disease was 4.9; range 1-37). Then the disease-drug association tool was pharmacogenomically annotated, with an average of 1.8 pharmacogenomically annotated drugs associated/disease. Applying this tool to a prospectively enrolled >1,000 patient cohort from a tertiary medical center showed that 90% of the top ∼20 diseases in this population and ≥93% of patients could appropriately be treated with ≥1 medication with actionable pharmacogenomic information. When combined with clinical patient genotypes, this tool permits delivery of patient-specific pharmacogenomically informed disease treatment recommendations to inform the treatment of many medical conditions of the US population, a key initial step towards implementation of precision medicine.
© 2016 The American Society for Clinical Pharmacology and Therapeutics.

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Year:  2016        PMID: 26940584      PMCID: PMC5570547          DOI: 10.1002/cpt.364

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  31 in total

1.  CPIC: Clinical Pharmacogenetics Implementation Consortium of the Pharmacogenomics Research Network.

Authors:  M V Relling; T E Klein
Journal:  Clin Pharmacol Ther       Date:  2011-01-26       Impact factor: 6.875

2.  Survey of genetic counselors and clinical geneticists' use and attitudes toward pharmacogenetic testing.

Authors:  S B Haga; J M O'Daniel; G M Tindall; R Mills; I M Lipkus; R Agans
Journal:  Clin Genet       Date:  2012-02-19       Impact factor: 4.438

3.  Evidence for Clinical Implementation of Pharmacogenomics in Cardiac Drugs.

Authors:  Amy L Kaufman; Jared Spitz; Michael Jacobs; Matthew Sorrentino; Shennin Yuen; Keith Danahey; Donald Saner; Teri E Klein; Russ B Altman; Mark J Ratain; Peter H O'Donnell
Journal:  Mayo Clin Proc       Date:  2015-06       Impact factor: 7.616

Review 4.  Pharmacogenomics in the clinic.

Authors:  Mary V Relling; William E Evans
Journal:  Nature       Date:  2015-10-15       Impact factor: 49.962

5.  Clinical pharmacogenetics implementation: approaches, successes, and challenges.

Authors:  Kristin W Weitzel; Amanda R Elsey; Taimour Y Langaee; Benjamin Burkley; David R Nessl; Aniwaa Owusu Obeng; Benjamin J Staley; Hui-Jia Dong; Robert W Allan; J Felix Liu; Rhonda M Cooper-Dehoff; R David Anderson; Michael Conlon; Michael J Clare-Salzler; David R Nelson; Julie A Johnson
Journal:  Am J Med Genet C Semin Med Genet       Date:  2014-03-10       Impact factor: 3.908

6.  Primary care physicians' knowledge of and experience with pharmacogenetic testing.

Authors:  S B Haga; W Burke; G S Ginsburg; R Mills; R Agans
Journal:  Clin Genet       Date:  2012-07-03       Impact factor: 4.438

Review 7.  The 1200 patients project: creating a new medical model system for clinical implementation of pharmacogenomics.

Authors:  P H O'Donnell; A Bush; J Spitz; K Danahey; D Saner; S Das; N J Cox; M J Ratain
Journal:  Clin Pharmacol Ther       Date:  2012-08-29       Impact factor: 6.875

8.  A side effect resource to capture phenotypic effects of drugs.

Authors:  Michael Kuhn; Monica Campillos; Ivica Letunic; Lars Juhl Jensen; Peer Bork
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

9.  From genes to genomes in the clinic.

Authors:  Joris A Veltman; James R Lupski
Journal:  Genome Med       Date:  2015-07-29       Impact factor: 11.117

10.  Design and anticipated outcomes of the eMERGE-PGx project: a multicenter pilot for preemptive pharmacogenomics in electronic health record systems.

Authors:  L J Rasmussen-Torvik; S C Stallings; A S Gordon; B Almoguera; M A Basford; S J Bielinski; A Brautbar; M H Brilliant; D S Carrell; J J Connolly; D R Crosslin; K F Doheny; C J Gallego; O Gottesman; D S Kim; K A Leppig; R Li; S Lin; S Manzi; A R Mejia; J A Pacheco; V Pan; J Pathak; C L Perry; J F Peterson; C A Prows; J Ralston; L V Rasmussen; M D Ritchie; S Sadhasivam; S A Scott; M Smith; A Vega; A A Vinks; S Volpi; W A Wolf; E Bottinger; R L Chisholm; C G Chute; J L Haines; J B Harley; B Keating; I A Holm; I J Kullo; G P Jarvik; E B Larson; T Manolio; C A McCarty; D A Nickerson; S E Scherer; M S Williams; D M Roden; J C Denny
Journal:  Clin Pharmacol Ther       Date:  2014-06-24       Impact factor: 6.875

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  7 in total

1.  Assessment of patient perceptions of genomic testing to inform pharmacogenomic implementation.

Authors:  Yee Ming Lee; Ryan P McKillip; Brittany A Borden; Catherine E Klammer; Mark J Ratain; Peter H O'Donnell
Journal:  Pharmacogenet Genomics       Date:  2017-05       Impact factor: 2.089

2.  Impact of SLCO1B1 Pharmacogenetic Testing on Patient and Healthcare Outcomes: A Systematic Review.

Authors:  Jason L Vassy; Sojeong Chun; Sanjay Advani; Sophie A Ludin; Jason G Smith; Elaine C Alligood
Journal:  Clin Pharmacol Ther       Date:  2018-10-18       Impact factor: 6.875

3.  Patient Perceptions of Care as Influenced by a Large Institutional Pharmacogenomic Implementation Program.

Authors:  R P McKillip; B A Borden; P Galecki; S A Ham; L Patrick-Miller; J P Hall; S Hussain; K Danahey; M Siegler; M J Sorrentino; Y Sacro; A M Davis; D T Rubin; K Lipstreuer; T S Polonsky; R Nanda; W R Harper; J L Koyner; D L Burnet; W M Stadler; M J Ratain; D O Meltzer; P H O'Donnell
Journal:  Clin Pharmacol Ther       Date:  2017-04-04       Impact factor: 6.875

4.  Appraisal and development of evidence-based clinical decision support to enable perioperative pharmacogenomic application.

Authors:  Brittany A Borden; Ellie H Jhun; Keith Danahey; Emily Schierer; Jeffrey L Apfelbaum; Magdalena Anitescu; Randall Knoebel; Sajid Shahul; Tien M Truong; Mark J Ratain; Peter H O'Donnell
Journal:  Pharmacogenomics J       Date:  2021-08-10       Impact factor: 3.245

5.  The Pharmacogenomics Research Network Translational Pharmacogenetics Program: Outcomes and Metrics of Pharmacogenetic Implementations Across Diverse Healthcare Systems.

Authors:  J A Luzum; R E Pakyz; A R Elsey; C E Haidar; J F Peterson; M Whirl-Carrillo; S K Handelman; K Palmer; J M Pulley; M Beller; J S Schildcrout; J R Field; K W Weitzel; R M Cooper-DeHoff; L H Cavallari; P H O'Donnell; R B Altman; N Pereira; M J Ratain; D M Roden; P J Embi; W Sadee; T E Klein; J A Johnson; M V Relling; L Wang; R M Weinshilboum; A R Shuldiner; R R Freimuth
Journal:  Clin Pharmacol Ther       Date:  2017-06-09       Impact factor: 6.875

6.  Validation of a Large Custom-Designed Pharmacogenomics Panel on an Array Genotyping Platform.

Authors:  Nga Yeung Tang; Xun Pei; David George; Larry House; Keith Danahey; Elizabeth Lipschultz; Mark J Ratain; Peter H O'Donnell; Kiang-Teck J Yeo; Xander M R van Wijk
Journal:  J Appl Lab Med       Date:  2021-11-01

Review 7.  Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development.

Authors:  Marc Hinderer; Martin Boeker; Sebastian A Wagner; Martin Lablans; Stephanie Newe; Jan L Hülsemann; Michael Neumaier; Harald Binder; Harald Renz; Till Acker; Hans-Ulrich Prokosch; Martin Sedlmayr
Journal:  BMC Med Inform Decis Mak       Date:  2017-06-06       Impact factor: 2.796

  7 in total

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