Literature DB >> 26938837

Automated Prediction of Catalytic Mechanism and Rate Law Using Graph-Based Reaction Path Sampling.

Scott Habershon1.   

Abstract

In a recent article [ J. Chem. Phys. 2015 , 143 , 094106 ], we introduced a novel graph-based sampling scheme which can be used to generate chemical reaction paths in many-atom systems in an efficient and highly automated manner. The main goal of this work is to demonstrate how this approach, when combined with direct kinetic modeling, can be used to determine the mechanism and phenomenological rate law of a complex catalytic cycle, namely cobalt-catalyzed hydroformylation of ethene. Our graph-based sampling scheme generates 31 unique chemical products and 32 unique chemical reaction pathways; these sampled structures and reaction paths enable automated construction of a kinetic network model of the catalytic system when combined with density functional theory (DFT) calculations of free energies and resultant transition-state theory rate constants. Direct simulations of this kinetic network across a range of initial reactant concentrations enables determination of both the reaction mechanism and the associated rate law in an automated fashion, without the need for either presupposing a mechanism or making steady-state approximations in kinetic analysis. Most importantly, we find that the reaction mechanism which emerges from these simulations is exactly that originally proposed by Heck and Breslow; furthermore, the simulated rate law is also consistent with previous experimental and computational studies, exhibiting a complex dependence on carbon monoxide pressure. While the inherent errors of using DFT simulations to model chemical reactivity limit the quantitative accuracy of our calculated rates, this work confirms that our automated simulation strategy enables direct analysis of catalytic mechanisms from first principles.

Entities:  

Year:  2016        PMID: 26938837     DOI: 10.1021/acs.jctc.6b00005

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  9 in total

1.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

Review 2.  The Matter Simulation (R)evolution.

Authors:  Alán Aspuru-Guzik; Roland Lindh; Markus Reiher
Journal:  ACS Cent Sci       Date:  2018-02-06       Impact factor: 14.553

3.  Efficient prediction of reaction paths through molecular graph and reaction network analysis.

Authors:  Yeonjoon Kim; Jin Woo Kim; Zeehyo Kim; Woo Youn Kim
Journal:  Chem Sci       Date:  2017-12-12       Impact factor: 9.825

Review 4.  A Trajectory-Based Method to Explore Reaction Mechanisms.

Authors:  Saulo A Vázquez; Xose L Otero; Emilio Martinez-Nunez
Journal:  Molecules       Date:  2018-11-30       Impact factor: 4.411

5.  Autonomous Reaction Network Exploration in Homogeneous and Heterogeneous Catalysis.

Authors:  Miguel Steiner; Markus Reiher
Journal:  Top Catal       Date:  2022-01-13       Impact factor: 2.910

6.  Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools.

Authors:  Hirotoshi Hirai; Ryosuke Jinnouchi
Journal:  RSC Adv       Date:  2022-08-17       Impact factor: 4.036

Review 7.  Graph-Driven Reaction Discovery: Progress, Challenges, and Future Opportunities.

Authors:  Idil Ismail; Raphael Chantreau Majerus; Scott Habershon
Journal:  J Phys Chem A       Date:  2022-10-03       Impact factor: 2.944

8.  An automated method to find reaction mechanisms and solve the kinetics in organometallic catalysis.

Authors:  J A Varela; S A Vázquez; E Martínez-Núñez
Journal:  Chem Sci       Date:  2017-03-07       Impact factor: 9.825

9.  Exploring the full catalytic cycle of rhodium(i)-BINAP-catalysed isomerisation of allylic amines: a graph theory approach for path optimisation.

Authors:  Takayoshi Yoshimura; Satoshi Maeda; Tetsuya Taketsugu; Masaya Sawamura; Keiji Morokuma; Seiji Mori
Journal:  Chem Sci       Date:  2017-05-03       Impact factor: 9.825

  9 in total

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