Literature DB >> 26931887

A Mo-anode-based in-house source for small-angle X-ray scattering measurements of biological macromolecules.

Linda K Bruetzel1, Stefan Fischer1, Annalena Salditt1, Steffen M Sedlak1, Bert Nickel1, Jan Lipfert1.   

Abstract

We demonstrate the use of a molybdenum-anode-based in-house small-angle X-ray scattering (SAXS) setup to study biological macromolecules in solution. Our system consists of a microfocus X-ray tube delivering a highly collimated flux of 2.5 × 10(6) photons/s at a beam size of 1.2 × 1.2 mm(2) at the collimation path exit and a maximum beam divergence of 0.16 mrad. The resulting observable scattering vectors q are in the range of 0.38 Å(-1) down to 0.009 Å(-1) in SAXS configuration and of 0.26 Å(-1) up to 5.7 Å(-1) in wide-angle X-ray scattering (WAXS) mode. To determine the capabilities of the instrument, we collected SAXS data on weakly scattering biological macromolecules including proteins and a nucleic acid sample with molecular weights varying from ∼12 to 69 kDa and concentrations of 1.5-24 mg/ml. The measured scattering data display a high signal-to-noise ratio up to q-values of ∼0.2 Å(-1) allowing for an accurate structural characterization of the samples. Moreover, the in-house source data are of sufficient quality to perform ab initio 3D structure reconstructions that are in excellent agreement with the available crystallographic structures. In addition, measurements for the detergent decyl-maltoside show that the setup can be used to determine the size, shape, and interactions (as characterized by the second virial coefficient) of detergent micelles. This demonstrates that the use of a Mo-anode based in-house source is sufficient to determine basic geometric parameters and 3D shapes of biomolecules and presents a viable alternative to valuable beam time at third generation synchrotron sources.

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Year:  2016        PMID: 26931887     DOI: 10.1063/1.4940936

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  7 in total

1.  X-ray-Based Techniques to Study the Nano-Bio Interface.

Authors:  Carlos Sanchez-Cano; Ramon A Alvarez-Puebla; John M Abendroth; Tobias Beck; Robert Blick; Yuan Cao; Frank Caruso; Indranath Chakraborty; Henry N Chapman; Chunying Chen; Bruce E Cohen; Andre L C Conceição; David P Cormode; Daxiang Cui; Kenneth A Dawson; Gerald Falkenberg; Chunhai Fan; Neus Feliu; Mingyuan Gao; Elisabetta Gargioni; Claus-C Glüer; Florian Grüner; Moustapha Hassan; Yong Hu; Yalan Huang; Samuel Huber; Nils Huse; Yanan Kang; Ali Khademhosseini; Thomas F Keller; Christian Körnig; Nicholas A Kotov; Dorota Koziej; Xing-Jie Liang; Beibei Liu; Sijin Liu; Yang Liu; Ziyao Liu; Luis M Liz-Marzán; Xiaowei Ma; Andres Machicote; Wolfgang Maison; Adrian P Mancuso; Saad Megahed; Bert Nickel; Ferdinand Otto; Cristina Palencia; Sakura Pascarelli; Arwen Pearson; Oula Peñate-Medina; Bing Qi; Joachim Rädler; Joseph J Richardson; Axel Rosenhahn; Kai Rothkamm; Michael Rübhausen; Milan K Sanyal; Raymond E Schaak; Heinz-Peter Schlemmer; Marius Schmidt; Oliver Schmutzler; Theo Schotten; Florian Schulz; A K Sood; Kathryn M Spiers; Theresa Staufer; Dominik M Stemer; Andreas Stierle; Xing Sun; Gohar Tsakanova; Paul S Weiss; Horst Weller; Fabian Westermeier; Ming Xu; Huijie Yan; Yuan Zeng; Ying Zhao; Yuliang Zhao; Dingcheng Zhu; Ying Zhu; Wolfgang J Parak
Journal:  ACS Nano       Date:  2021-03-02       Impact factor: 15.881

2.  3D-printed SAXS chamber for controlled in situ dialysis and optical characterization.

Authors:  Tamara Ehm; Julian Philipp; Martin Barkey; Martina Ober; Achim Theo Brinkop; David Simml; Miriam von Westphalen; Bert Nickel; Roy Beck; Joachim O Rädler
Journal:  J Synchrotron Radiat       Date:  2022-05-25       Impact factor: 2.557

3.  Quantitative evaluation of statistical errors in small-angle X-ray scattering measurements.

Authors:  Steffen M Sedlak; Linda K Bruetzel; Jan Lipfert
Journal:  J Appl Crystallogr       Date:  2017-03-29       Impact factor: 3.304

4.  Size-exclusion chromatography small-angle X-ray scattering of water soluble proteins on a laboratory instrument.

Authors:  Saskia Bucciarelli; Søren Roi Midtgaard; Martin Nors Pedersen; Søren Skou; Lise Arleth; Bente Vestergaard
Journal:  J Appl Crystallogr       Date:  2018-11-09       Impact factor: 3.304

5.  In situ small-angle X-ray scattering reveals strong condensation of DNA origami during silicification.

Authors:  Martina F Ober; Anna Baptist; Lea Wassermann; Amelie Heuer-Jungemann; Bert Nickel
Journal:  Nat Commun       Date:  2022-09-27       Impact factor: 17.694

6.  Shape and Interhelical Spacing of DNA Origami Nanostructures Studied by Small-Angle X-ray Scattering.

Authors:  Stefan Fischer; Caroline Hartl; Kilian Frank; Joachim O Rädler; Tim Liedl; Bert Nickel
Journal:  Nano Lett       Date:  2016-06-08       Impact factor: 11.189

7.  X-ray studies bridge the molecular and macro length scales during the emergence of CoO assemblies.

Authors:  Lukas Grote; Cecilia A Zito; Kilian Frank; Ann-Christin Dippel; Patrick Reisbeck; Krzysztof Pitala; Kristina O Kvashnina; Stephen Bauters; Blanka Detlefs; Oleh Ivashko; Pallavi Pandit; Matthias Rebber; Sani Y Harouna-Mayer; Bert Nickel; Dorota Koziej
Journal:  Nat Commun       Date:  2021-07-20       Impact factor: 14.919

  7 in total

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