Literature DB >> 26928320

Quantum Mechanical Studies on the Photophysics and the Photochemistry of Nucleic Acids and Nucleobases.

Roberto Improta1, Fabrizio Santoro2, Lluís Blancafort3.   

Abstract

The photophysics and photochemistry of DNA is of great importance due to the potential damage of the genetic code by UV light. Quantum mechanical studies have played a key role in interpretating the results of modern time-resolved pump-probe spectroscopy, and in elucidating the main photoactivated reactive paths. This review provides a concise, complete picture of the computational studies carried out, approximately, in the past decade. We start with an overview of the photophysics of the nucleobases in the gas phase and in solution. We discuss the proposed mechanisms for ultrafast decay to the ground state, that involve conical intersections, consider the role of triplet states, and analyze how the solvent modulates the photophysics. Then we move to larger systems, from dinucleotides to single- and double-stranded oligonucleotides. We focus on the possible role of charge transfer and delocalized or excitonic states in the photophysics of these systems and discuss the main photochemical paths. We finish with an outlook on the current challenges in the field and future directions of research.

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Year:  2016        PMID: 26928320     DOI: 10.1021/acs.chemrev.5b00444

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  40 in total

1.  UV-Induced Adenine Radicals Induced in DNA A-Tracts: Spectral and Dynamical Characterization.

Authors:  Akos Banyasz; Tiia-Maaria Ketola; Aurora Muñoz-Losa; Sunny Rishi; Amitava Adhikary; Michael D Sevilla; Lara Martinez-Fernandez; Roberto Improta; Dimitra Markovitsi
Journal:  J Phys Chem Lett       Date:  2016-09-22       Impact factor: 6.475

2.  Photochemical pathways in nucleobases measured with an X-ray FEL.

Authors:  Thomas J A Wolf; Markus Gühr
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-05-20       Impact factor: 4.226

3.  COBRAMM 2.0 - A software interface for tailoring molecular electronic structure calculations and running nanoscale (QM/MM) simulations.

Authors:  Oliver Weingart; Artur Nenov; Piero Altoè; Ivan Rivalta; Javier Segarra-Martí; Irina Dokukina; Marco Garavelli
Journal:  J Mol Model       Date:  2018-09-03       Impact factor: 1.810

Review 4.  Studying the excited electronic states of guanine rich DNA quadruplexes by quantum mechanical methods: main achievements and perspectives.

Authors:  Lara Martínez-Fernández; Luciana Esposito; Roberto Improta
Journal:  Photochem Photobiol Sci       Date:  2020-04-15       Impact factor: 3.982

5.  What Makes Thienoguanosine an Outstanding Fluorescent DNA Probe?

Authors:  Jagannath Kuchlyan; Lara Martinez-Fernandez; Mattia Mori; Krishna Gavvala; Stefano Ciaco; Christian Boudier; Ludovic Richert; Pascal Didier; Yitzhak Tor; Roberto Improta; Yves Mély
Journal:  J Am Chem Soc       Date:  2020-09-23       Impact factor: 15.419

6.  Rethinking Causation for Data-intensive Biology: Constraints, Cancellations, and Quantized Organisms: Causality in complex organisms is sculpted by constraints rather than instigators, with outcomes perhaps better described by quantized patterns than rectilinear pathways.

Authors:  Douglas E Brash
Journal:  Bioessays       Date:  2020-06-02       Impact factor: 4.345

7.  TURBOMOLE: Modular program suite for ab initio quantum-chemical and condensed-matter simulations.

Authors:  Sree Ganesh Balasubramani; Guo P Chen; Sonia Coriani; Michael Diedenhofen; Marius S Frank; Yannick J Franzke; Filipp Furche; Robin Grotjahn; Michael E Harding; Christof Hättig; Arnim Hellweg; Benjamin Helmich-Paris; Christof Holzer; Uwe Huniar; Martin Kaupp; Alireza Marefat Khah; Sarah Karbalaei Khani; Thomas Müller; Fabian Mack; Brian D Nguyen; Shane M Parker; Eva Perlt; Dmitrij Rappoport; Kevin Reiter; Saswata Roy; Matthias Rückert; Gunnar Schmitz; Marek Sierka; Enrico Tapavicza; David P Tew; Christoph van Wüllen; Vamsee K Voora; Florian Weigend; Artur Wodyński; Jason M Yu
Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

8.  Modeling solvation effects on absorption and fluorescence spectra of indole in aqueous solution.

Authors:  Salsabil Abou-Hatab; Vincenzo Carnevale; Spiridoula Matsika
Journal:  J Chem Phys       Date:  2021-02-14       Impact factor: 3.488

9.  Excited state tracking during the relaxation of coordination compounds.

Authors:  Juan Sanz García; Martial Boggio-Pasqua; Ilaria Ciofini; Marco Campetella
Journal:  J Comput Chem       Date:  2019-02-23       Impact factor: 3.376

10.  Theoretical Study on the Photo-Oxidation and Photoreduction of an Azetidine Derivative as a Model of DNA Repair.

Authors:  Miriam Navarrete-Miguel; Antonio Francés-Monerris; Miguel A Miranda; Virginie Lhiaubet-Vallet; Daniel Roca-Sanjuán
Journal:  Molecules       Date:  2021-05-14       Impact factor: 4.411

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