Literature DB >> 26919983

Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes.

Shu-Fen Li1, Guo-Jun Zhang2, Jin-Hong Yuan1, Chuan-Liang Deng1, Wu-Jun Gao3.   

Abstract

MAIN
CONCLUSION: The present review discusses the roles of repetitive sequences played in plant sex chromosome evolution, and highlights epigenetic modification as potential mechanism of repetitive sequences involved in sex chromosome evolution. Sex determination in plants is mostly based on sex chromosomes. Classic theory proposes that sex chromosomes evolve from a specific pair of autosomes with emergence of a sex-determining gene(s). Subsequently, the newly formed sex chromosomes stop recombination in a small region around the sex-determining locus, and over time, the non-recombining region expands to almost all parts of the sex chromosomes. Accumulation of repetitive sequences, mostly transposable elements and tandem repeats, is a conspicuous feature of the non-recombining region of the Y chromosome, even in primitive one. Repetitive sequences may play multiple roles in sex chromosome evolution, such as triggering heterochromatization and causing recombination suppression, leading to structural and morphological differentiation of sex chromosomes, and promoting Y chromosome degeneration and X chromosome dosage compensation. In this article, we review the current status of this field, and based on preliminary evidence, we posit that repetitive sequences are involved in sex chromosome evolution probably via epigenetic modification, such as DNA and histone methylation, with small interfering RNAs as the mediator.

Entities:  

Keywords:  Dioecious plant; Heterochromatization; Recombination suppression; Repetitive elements; Sex chromosome evolution; Transposable elements

Mesh:

Substances:

Year:  2016        PMID: 26919983     DOI: 10.1007/s00425-016-2485-7

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  122 in total

1.  Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome.

Authors:  Zdenek Kubat; Jitka Zluvova; Ivan Vogel; Viera Kovacova; Tomas Cermak; Radim Cegan; Roman Hobza; Boris Vyskot; Eduard Kejnovsky
Journal:  New Phytol       Date:  2014-01-23       Impact factor: 10.151

Review 2.  Plant sex chromosome evolution.

Authors:  Deborah Charlesworth
Journal:  J Exp Bot       Date:  2012-11-03       Impact factor: 6.992

Review 3.  RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Authors:  Marjori A Matzke; Rebecca A Mosher
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

4.  Chromosome painting of Y chromosomes and isolation of a Y chromosome-specific repetitive sequence in the dioecious plant Rumex acetosa.

Authors:  F Shibata; M Hizume; Y Kuroki
Journal:  Chromosoma       Date:  1999-08       Impact factor: 4.316

Review 5.  The evolution of the peculiarities of mammalian sex chromosomes: an epigenetic view.

Authors:  Eva Jablonka
Journal:  Bioessays       Date:  2004-12       Impact factor: 4.345

6.  An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution.

Authors:  Roman Hobza; Martina Lengerova; Julia Svoboda; Hana Kubekova; Eduard Kejnovsky; Boris Vyskot
Journal:  Chromosoma       Date:  2006-04-13       Impact factor: 4.316

7.  LTR retrotransposons in the dioecious plant Silene latifolia.

Authors:  Sachihiro Matsunaga; Fumi Yagisawa; Maki Yamamoto; Wakana Uchida; Shunsuke Nakao; Shigeyuki Kawano
Journal:  Genome       Date:  2002-08       Impact factor: 2.166

8.  Degenerating Y chromosome of Drosophila miranda: a trap for retrotransposons.

Authors:  M Steinemann; S Steinemann
Journal:  Proc Natl Acad Sci U S A       Date:  1992-08-15       Impact factor: 11.205

9.  Genetic and physical maps around the sex-determining M-locus of the dioecious plant asparagus.

Authors:  Alexa Telgmann-Rauber; Ari Jamsari; Michael S Kinney; J Chris Pires; Christian Jung
Journal:  Mol Genet Genomics       Date:  2007-07-03       Impact factor: 3.291

10.  Structure and evolution of Apetala3, a sex-linked gene in Silene latifolia.

Authors:  Radim Cegan; Gabriel Ab Marais; Hana Kubekova; Nicolas Blavet; Alex Widmer; Boris Vyskot; Jaroslav Dolezel; Jan Safár; Roman Hobza
Journal:  BMC Plant Biol       Date:  2010-08-18       Impact factor: 4.215

View more
  19 in total

Review 1.  Genomic architecture and functional unit of mimicry supergene in female limited Batesian mimic Papilio butterflies.

Authors:  Shinya Komata; Rei Kajitani; Takehiko Itoh; Haruhiko Fujiwara
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-06-13       Impact factor: 6.671

2.  Inferring the Genetic Basis of Sex Determination from the Genome of a Dioecious Nightshade.

Authors:  Meng Wu; David C Haak; Gregory J Anderson; Matthew W Hahn; Leonie C Moyle; Rafael F Guerrero
Journal:  Mol Biol Evol       Date:  2021-06-25       Impact factor: 16.240

Review 3.  Epigenetics drive the evolution of sex chromosomes in animals and plants.

Authors:  Aline Muyle; Doris Bachtrog; Gabriel A B Marais; James M A Turner
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-19       Impact factor: 6.671

4.  DPTEdb, an integrative database of transposable elements in dioecious plants.

Authors:  Shu-Fen Li; Guo-Jun Zhang; Xue-Jin Zhang; Jin-Hong Yuan; Chuan-Liang Deng; Lian-Feng Gu; Wu-Jun Gao
Journal:  Database (Oxford)       Date:  2016-05-12       Impact factor: 3.451

5.  Comparative transcriptome analysis reveals differentially expressed genes associated with sex expression in garden asparagus (Asparagus officinalis).

Authors:  Shu-Fen Li; Guo-Jun Zhang; Xue-Jin Zhang; Jin-Hong Yuan; Chuan-Liang Deng; Wu-Jun Gao
Journal:  BMC Plant Biol       Date:  2017-08-22       Impact factor: 4.215

6.  Satellite DNA and Transposable Elements in Seabuckthorn (Hippophae rhamnoides), a Dioecious Plant with Small Y and Large X Chromosomes.

Authors:  Janka Puterova; Olga Razumova; Tomas Martinek; Oleg Alexandrov; Mikhail Divashuk; Zdenek Kubat; Roman Hobza; Gennady Karlov; Eduard Kejnovsky
Journal:  Genome Biol Evol       Date:  2017-01-01       Impact factor: 3.416

7.  Parallel evolution of Batesian mimicry supergene in two Papilio butterflies, P. polytes and P. memnon.

Authors:  Takuro Iijima; Rei Kajitani; Shinya Komata; Chung-Ping Lin; Teiji Sota; Takehiko Itoh; Haruhiko Fujiwara
Journal:  Sci Adv       Date:  2018-04-18       Impact factor: 14.136

Review 8.  Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants.

Authors:  Shu-Fen Li; Ting Su; Guang-Qian Cheng; Bing-Xiao Wang; Xu Li; Chuan-Liang Deng; Wu-Jun Gao
Journal:  Genes (Basel)       Date:  2017-10-24       Impact factor: 4.096

9.  Landscape of snake' sex chromosomes evolution spanning 85 MYR reveals ancestry of sequences despite distinct evolutionary trajectories.

Authors:  Patrik F Viana; Tariq Ezaz; Marcelo de Bello Cioffi; Thomas Liehr; Ahmed Al-Rikabi; Leonardo G Goll; Anderson M Rocha; Eliana Feldberg
Journal:  Sci Rep       Date:  2020-07-27       Impact factor: 4.379

10.  DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia.

Authors:  José Luis Rodríguez Lorenzo; Roman Hobza; Boris Vyskot
Journal:  BMC Genomics       Date:  2018-07-16       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.