Literature DB >> 26918676

Origin of the Regioselective Fatty-Acid Hydroxylation versus Decarboxylation by a Cytochrome P450 Peroxygenase: What Drives the Reaction to Biofuel Production?

Abayomi S Faponle1, Matthew G Quesne1, Sam P de Visser2.   

Abstract

The cytochromes P450 are heme-based mono-oxygenases or peroxygenases involved in vital reaction processes for human health. A recently described P450 per-oxygenase, OleTJE , converts long-chain fatty acids to terminal olefins and as such may have biotechnological relevance in biodiesel production. However, the reaction produces significant amounts of α- and β-hydroxylation by-products, and their origin are poorly understood. Herein, we elucidate through a QM/MM study on the bifurcation pathways how the three possible products are generated and show how the enzyme can be further engineered for optimum desaturase activity. The studies showed that the polarity and the solvent accessibility of the substrate in the binding pocket destabilize the OH-rebound pathways and kinetically enable a thermodynamically otherwise unfavorable decarboxylation reaction. The origins of the bifurcation pathways are analyzed with valence-bond models that highlight the differences in reaction mechanism.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  bioengineering; cytochromes; density functional calculations; heme proteins; iron

Mesh:

Substances:

Year:  2016        PMID: 26918676     DOI: 10.1002/chem.201600739

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  26 in total

1.  Molecular basis of P450 OleTJE: an investigation of substrate binding mechanism and major pathways.

Authors:  Juan Du; Lin Liu; Li Zhong Guo; Xiao Jun Yao; Jian Ming Yang
Journal:  J Comput Aided Mol Des       Date:  2017-03-25       Impact factor: 3.686

Review 2.  Divergent mechanisms of iron-containing enzymes for hydrocarbon biosynthesis.

Authors:  Courtney E Wise; Job L Grant; Jose A Amaya; Steven C Ratigan; Chun H Hsieh; Olivia M Manley; Thomas M Makris
Journal:  J Biol Inorg Chem       Date:  2016-12-21       Impact factor: 3.358

3.  Hydrogen Atom Abstraction by High-Valent Fe(OH) versus Mn(OH) Porphyrinoid Complexes: Mechanistic Insights from Experimental and Computational Studies.

Authors:  Jan Paulo T Zaragoza; Daniel C Cummins; M Qadri E Mubarak; Maxime A Siegler; Sam P de Visser; David P Goldberg
Journal:  Inorg Chem       Date:  2019-12-05       Impact factor: 5.165

4.  The Enigmatic P450 Decarboxylase OleT Is Capable of, but Evolved To Frustrate, Oxygen Rebound Chemistry.

Authors:  Chun H Hsieh; Xiongyi Huang; José A Amaya; Cooper D Rutland; Carson L Keys; John T Groves; Rachel N Austin; Thomas M Makris
Journal:  Biochemistry       Date:  2017-06-26       Impact factor: 3.162

5.  Probing the Mechanism of Isonitrile Formation by a Non-Heme Iron(II)-Dependent Oxidase/Decarboxylase.

Authors:  Antonio Del Rio Flores; David W Kastner; Yongle Du; Maanasa Narayanamoorthy; Yuanbo Shen; Wenlong Cai; Vyshnavi Vennelakanti; Nicholas A Zill; Luisa B Dell; Rui Zhai; Heather J Kulik; Wenjun Zhang
Journal:  J Am Chem Soc       Date:  2022-03-07       Impact factor: 15.419

6.  Singlet versus Triplet Reactivity in an Mn(V)-Oxo Species: Testing Theoretical Predictions Against Experimental Evidence.

Authors:  Tzuhsiung Yang; Matthew G Quesne; Heather M Neu; Fabián G Cantú Reinhard; David P Goldberg; Sam P de Visser
Journal:  J Am Chem Soc       Date:  2016-09-14       Impact factor: 15.419

7.  In vitro oxidative decarboxylation of free fatty acids to terminal alkenes by two new P450 peroxygenases.

Authors:  Huifang Xu; Linlin Ning; Wenxia Yang; Bo Fang; Cong Wang; Yun Wang; Jian Xu; Severine Collin; Frederic Laeuffer; Laurent Fourage; Shengying Li
Journal:  Biotechnol Biofuels       Date:  2017-09-07       Impact factor: 6.040

8.  How Are Substrate Binding and Catalysis Affected by Mutating Glu127 and Arg161 in Prolyl-4-hydroxylase? A QM/MM and MD Study.

Authors:  Amy Timmins; Sam P de Visser
Journal:  Front Chem       Date:  2017-11-09       Impact factor: 5.221

Review 9.  Beyond ferryl-mediated hydroxylation: 40 years of the rebound mechanism and C-H activation.

Authors:  Xiongyi Huang; John T Groves
Journal:  J Biol Inorg Chem       Date:  2016-12-01       Impact factor: 3.358

10.  Product Distributions of Cytochrome P450 OleTJE with Phenyl-Substituted Fatty Acids: A Computational Study.

Authors:  Yen-Ting Lin; Sam P de Visser
Journal:  Int J Mol Sci       Date:  2021-07-02       Impact factor: 5.923

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