Literature DB >> 26913834

Particle Motion Analysis Reveals Nanoscale Bond Characteristics and Enhances Dynamic Range for Biosensing.

Emiel W A Visser1,2, Leo J van IJzendoorn1,2, Menno W J Prins1,2,3.   

Abstract

Biofunctionalized colloidal particles are widely used as labels in bioanalytical assays, lab-on-chip devices, biophysical research, and in studies on live biological systems. With detection resolution going down to the level of single particles and single molecules, understanding the nature of the interaction of the particles with surfaces and substrates becomes of paramount importance. Here, we present a comprehensive study of motion patterns of colloidal particles maintained in close proximity to a substrate by short molecular tethers (40 nm). The motion of the particles (500-1000 nm) was optically tracked with a very high localization accuracy (below 3 nm). A surprisingly large variation in motion patterns was observed, which can be attributed to properties of the particle-molecule-substrate system, namely the bond number, the nature of the bond, particle protrusions, and substrate nonuniformities. Experimentally observed motion patterns were compared to numerical Monte Carlo simulations, revealing a close correspondence between the observed motion patterns and properties of the molecular system. Particles bound via single tethers show distinct disc-, ring-, and bell-shaped motion patterns, where the ring- and bell-shaped patterns are caused by protrusions on the particle in the direct vicinity of the molecular attachment point. Double and triple tethered particles exhibit stripe-shaped and triangular-shaped motion patterns, respectively. The developed motion pattern analysis allows for discrimination between particles bound by different bond types, which opens the possibility to improve the limit of detection and the dynamic range of bioanalytical assays, with a projected increase of dynamic range by nearly 2 orders of magnitude.

Keywords:  Monte Carlo simulations; colloidal particles; motion analysis; particle based biosensing; particle−substrate interactions; sensing dynamic range; tethered particle motion

Year:  2016        PMID: 26913834     DOI: 10.1021/acsnano.5b07021

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  7 in total

1.  Single-Bond Association Kinetics Determined by Tethered Particle Motion: Concept and Simulations.

Authors:  Koen E Merkus; Menno W J Prins; Cornelis Storm
Journal:  Biophys J       Date:  2016-10-18       Impact factor: 4.033

2.  How does temperature impact the conformation of single DNA molecules below melting temperature?

Authors:  Annaël Brunet; Laurence Salomé; Philippe Rousseau; Nicolas Destainville; Manoel Manghi; Catherine Tardin
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

3.  Three-Dimensional Tracking of Tethered Particles for Probing Nanometer-Scale Single-Molecule Dynamics Using a Plasmonic Microscope.

Authors:  Guangzhong Ma; Zijian Wan; Yunze Yang; Wenwen Jing; Shaopeng Wang
Journal:  ACS Sens       Date:  2021-11-17       Impact factor: 7.711

4.  Detachment and successive re-attachment of multiple, reversibly-binding tethers result in irreversible bacterial adhesion to surfaces.

Authors:  Jelmer Sjollema; Henny C van der Mei; Connie L Hall; Brandon W Peterson; Joop de Vries; Lei Song; Ed D de Jong; Henk J Busscher; Jan J T M Swartjes
Journal:  Sci Rep       Date:  2017-06-29       Impact factor: 4.379

5.  Continuous biomarker monitoring by particle mobility sensing with single molecule resolution.

Authors:  Emiel W A Visser; Junhong Yan; Leo J van IJzendoorn; Menno W J Prins
Journal:  Nat Commun       Date:  2018-06-29       Impact factor: 14.919

6.  Plasmon Rulers as a Probe for Real-Time Microsecond Conformational Dynamics of Single Molecules.

Authors:  Emiel W A Visser; Matěj Horáček; Peter Zijlstra
Journal:  Nano Lett       Date:  2018-11-26       Impact factor: 11.189

7.  A Multiplexable Plasmonic Hairpin-DNA Sensor Based On Target-specific Tether Dynamics.

Authors:  Jeanne Elisabeth van Dongen; Laurens Rudi Spoelstra; Johanna Theodora Wilhelmina Berendsen; Joshua Taylor Loessberg-Zahl; Jan Cornelis Titus Eijkel; Loes Irene Segerink
Journal:  ACS Sens       Date:  2021-12-01       Impact factor: 7.711

  7 in total

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