Literature DB >> 26912755

Role of Clinicogenomics in Infectious Disease Diagnostics and Public Health Microbiology.

Lars F Westblade1, Alex van Belkum2, Adam Grundhoff3,4, George M Weinstock5, Eric G Pamer6, Mark J Pallen7, W Michael Dunne8.   

Abstract

Clinicogenomics is the exploitation of genome sequence data for diagnostic, therapeutic, and public health purposes. Central to this field is the high-throughput DNA sequencing of genomes and metagenomes. The role of clinicogenomics in infectious disease diagnostics and public health microbiology was the topic of discussion during a recent symposium (session 161) presented at the 115th general meeting of the American Society for Microbiology that was held in New Orleans, LA. What follows is a collection of the most salient and promising aspects from each presentation at the symposium.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID: 26912755      PMCID: PMC4922100          DOI: 10.1128/JCM.02664-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  58 in total

1.  Metagenomic analysis of tuberculosis in a mummy.

Authors:  Jacqueline Z-M Chan; Martin J Sergeant; Oona Y-C Lee; David E Minnikin; Gurdyal S Besra; Ilidkó Pap; Mark Spigelman; Helen D Donoghue; Mark J Pallen
Journal:  N Engl J Med       Date:  2013-07-18       Impact factor: 91.245

2.  Diagnostic strategy used to establish etiologies of encephalitis in a prospective cohort of patients in England.

Authors:  H E Ambrose; J Granerod; J P Clewley; N W S Davies; G Keir; R Cunningham; M Zuckerman; K J Mutton; K N Ward; S Ijaz; N S Crowcroft; D W G Brown
Journal:  J Clin Microbiol       Date:  2011-08-24       Impact factor: 5.948

Review 3.  Next-generation sequencing technologies in diagnostic virology.

Authors:  Luisa Barzon; Enrico Lavezzo; Giulia Costanzi; Elisa Franchin; Stefano Toppo; Giorgio Palù
Journal:  J Clin Virol       Date:  2013-03-21       Impact factor: 3.168

Review 4.  Dead or alive: molecular assessment of microbial viability.

Authors:  Gerard A Cangelosi; John S Meschke
Journal:  Appl Environ Microbiol       Date:  2014-07-18       Impact factor: 4.792

5.  A metagenome-wide association study of gut microbiota in type 2 diabetes.

Authors:  Junjie Qin; Yingrui Li; Zhiming Cai; Shenghui Li; Jianfeng Zhu; Fan Zhang; Suisha Liang; Wenwei Zhang; Yuanlin Guan; Dongqian Shen; Yangqing Peng; Dongya Zhang; Zhuye Jie; Wenxian Wu; Youwen Qin; Wenbin Xue; Junhua Li; Lingchuan Han; Donghui Lu; Peixian Wu; Yali Dai; Xiaojuan Sun; Zesong Li; Aifa Tang; Shilong Zhong; Xiaoping Li; Weineng Chen; Ran Xu; Mingbang Wang; Qiang Feng; Meihua Gong; Jing Yu; Yanyan Zhang; Ming Zhang; Torben Hansen; Gaston Sanchez; Jeroen Raes; Gwen Falony; Shujiro Okuda; Mathieu Almeida; Emmanuelle LeChatelier; Pierre Renault; Nicolas Pons; Jean-Michel Batto; Zhaoxi Zhang; Hua Chen; Ruifu Yang; Weimou Zheng; Songgang Li; Huanming Yang; Jian Wang; S Dusko Ehrlich; Rasmus Nielsen; Oluf Pedersen; Karsten Kristiansen; Jun Wang
Journal:  Nature       Date:  2012-09-26       Impact factor: 49.962

Review 6.  Microbiota-mediated colonization resistance against intestinal pathogens.

Authors:  Charlie G Buffie; Eric G Pamer
Journal:  Nat Rev Immunol       Date:  2013-10-07       Impact factor: 53.106

7.  Are diagnostic and public health bacteriology ready to become branches of genomic medicine?

Authors:  Mark J Pallen; Nicholas J Loman
Journal:  Genome Med       Date:  2011-08-23       Impact factor: 11.117

8.  Rapid metagenomic diagnostics for suspected outbreak of severe pneumonia.

Authors:  Nicole Fischer; Holger Rohde; Daniela Indenbirken; Thomas Günther; Kerstin Reumann; Marc Lütgehetmann; Thomas Meyer; Stefan Kluge; Martin Aepfelbacher; Malik Alawi; Adam Grundhoff
Journal:  Emerg Infect Dis       Date:  2014-06       Impact factor: 6.883

9.  Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.

Authors:  Charlie G Buffie; Vanni Bucci; Richard R Stein; Peter T McKenney; Lilan Ling; Asia Gobourne; Daniel No; Hui Liu; Melissa Kinnebrew; Agnes Viale; Eric Littmann; Marcel R M van den Brink; Robert R Jenq; Ying Taur; Chris Sander; Justin R Cross; Nora C Toussaint; Joao B Xavier; Eric G Pamer
Journal:  Nature       Date:  2014-10-22       Impact factor: 49.962

10.  Gut microbiomes of Malawian twin pairs discordant for kwashiorkor.

Authors:  Michelle I Smith; Tanya Yatsunenko; Mark J Manary; Indi Trehan; Rajhab Mkakosya; Jiye Cheng; Andrew L Kau; Stephen S Rich; Patrick Concannon; Josyf C Mychaleckyj; Jie Liu; Eric Houpt; Jia V Li; Elaine Holmes; Jeremy Nicholson; Dan Knights; Luke K Ursell; Rob Knight; Jeffrey I Gordon
Journal:  Science       Date:  2013-01-30       Impact factor: 47.728

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  18 in total

1.  Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.

Authors:  Qun Yan; Yu Mi Wi; Matthew J Thoendel; Yash S Raval; Kerryl E Greenwood-Quaintance; Matthew P Abdel; Patricio R Jeraldo; Nicholas Chia; Robin Patel
Journal:  J Clin Microbiol       Date:  2019-01-30       Impact factor: 5.948

2.  Evaluation of Pyrrolidonyl Arylamidase Activity in Staphylococcus delphini.

Authors:  Samantha T Compton; Stephen A Kania; Amy E Robertson; Sara D Lawhon; Stephen G Jenkins; Lars F Westblade; David A Bemis
Journal:  J Clin Microbiol       Date:  2016-12-21       Impact factor: 5.948

3.  Biographical Feature: William Michael Dunne, Jr., Ph.D.

Authors:  Betty A Forbes
Journal:  J Clin Microbiol       Date:  2017-09-06       Impact factor: 5.948

4.  Epidemiological Typing of Serratia marcescens Isolates by Whole-Genome Multilocus Sequence Typing.

Authors:  John W A Rossen; Jill Dombrecht; Diederik Vanfleteren; Katrien De Bruyne; Alex van Belkum; Sigrid Rosema; Mariette Lokate; Erik Bathoorn; Sandra Reuter; Hajo Grundmann; Julia Ertel; Paul G Higgins; Harald Seifert
Journal:  J Clin Microbiol       Date:  2019-03-28       Impact factor: 5.948

Review 5.  Innovative and rapid antimicrobial susceptibility testing systems.

Authors:  Alex van Belkum; Carey-Ann D Burnham; John W A Rossen; Frederic Mallard; Olivier Rochas; William Michael Dunne
Journal:  Nat Rev Microbiol       Date:  2020-02-13       Impact factor: 60.633

Review 6.  Next-generation sequencing applications in clinical bacteriology.

Authors:  Yair Motro; Jacob Moran-Gilad
Journal:  Biomol Detect Quantif       Date:  2017-10-23

7.  A case of pediatric visceral leishmaniasis-related hemophagocytic lymphohistiocytosis diagnosed by mNGS.

Authors:  Fang Guo; Lei Kang; Meixian Xu
Journal:  Int J Infect Dis       Date:  2020-05-18       Impact factor: 3.623

8.  Metagenomic next-generation sequencing diagnosis of peripheral pulmonary infectious lesions through virtual navigation, radial EBUS, ultrathin bronchoscopy, and ROSE.

Authors:  Nana Liu; Jianying Kan; Wenbin Cao; Jie Cao; Erlie Jiang; Yang Zhou; Mingfeng Zhao; Jing Feng
Journal:  J Int Med Res       Date:  2019-08-22       Impact factor: 1.671

9.  Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016.

Authors:  Norelle L Sherry; Courtney R Lane; Jason C Kwong; Mark Schultz; Michelle Sait; Kerrie Stevens; Susan Ballard; Anders Gonçalves da Silva; Torsten Seemann; Claire L Gorrie; Timothy P Stinear; Deborah A Williamson; Judith Brett; Annaliese van Diemen; Marion Easton; Benjamin P Howden
Journal:  J Clin Microbiol       Date:  2019-08-26       Impact factor: 5.948

Review 10.  Precision medicine: Uses and challenges.

Authors:  Nardeep Naithani; Amar Tej Atal; T V S V G K Tilak; Biju Vasudevan; Pratibha Misra; Sharmila Sinha
Journal:  Med J Armed Forces India       Date:  2021-07-03
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