Literature DB >> 26907610

Hfq: the flexible RNA matchmaker.

Taylor B Updegrove1, Aixia Zhang1, Gisela Storz2.   

Abstract

The RNA chaperone protein Hfq is critical to the function of small, base pairing RNAs in many bacteria. In the past few years, structures and modeling of wild type Hfq and assays of various mutants have documented that the homohexameric Hfq ring can contact RNA at four sites (proximal face, distal face, rim and C-terminal tail) and that different RNAs bind to these sites in various configurations. These studies together with novel in vitro and in vivo experimental approaches are beginning to give mechanistic insights into how Hfq acts to promote small RNA-mRNA pairing and indicate that flexibility is integral to the Hfq role in RNA matchmaking. Published by Elsevier Ltd.

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Year:  2016        PMID: 26907610      PMCID: PMC4821791          DOI: 10.1016/j.mib.2016.02.003

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  45 in total

Review 1.  The bacterial protein Hfq: much more than a mere RNA-binding factor.

Authors:  Patricio Sobrero; Claudio Valverde
Journal:  Crit Rev Microbiol       Date:  2012-03-21       Impact factor: 7.624

Review 2.  Structure and RNA-binding properties of the bacterial LSm protein Hfq.

Authors:  Evelyn Sauer
Journal:  RNA Biol       Date:  2013-03-27       Impact factor: 4.652

3.  Extracting intracellular diffusive states and transition rates from single-molecule tracking data.

Authors:  Fredrik Persson; Martin Lindén; Cecilia Unoson; Johan Elf
Journal:  Nat Methods       Date:  2013-02-10       Impact factor: 28.547

4.  Hfq proximity and orientation controls RNA annealing.

Authors:  Subrata Panja; Sarah A Woodson
Journal:  Nucleic Acids Res       Date:  2012-07-02       Impact factor: 16.971

5.  Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS.

Authors:  Charlotte A Henderson; Helen A Vincent; Alessandra Casamento; Carlanne M Stone; Jack O Phillips; Peter D Cary; Frank Sobott; Darren M Gowers; James E Taylor; Anastasia J Callaghan
Journal:  RNA       Date:  2013-06-26       Impact factor: 5.636

6.  Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA.

Authors:  Weiwei Wang; Lijun Wang; Jihui Wu; Qingguo Gong; Yunyu Shi
Journal:  Nucleic Acids Res       Date:  2013-04-19       Impact factor: 16.971

7.  Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract.

Authors:  Nicola Horstmann; Jillian Orans; Poul Valentin-Hansen; Samuel A Shelburne; Richard G Brennan
Journal:  Nucleic Acids Res       Date:  2012-09-10       Impact factor: 16.971

8.  Characterization of Vibrio cholerae Hfq provides novel insights into the role of the Hfq C-terminal region.

Authors:  Helen A Vincent; Charlotte A Henderson; Timothy J Ragan; Acely Garza-Garcia; Peter D Cary; Darren M Gowers; Marc Malfois; Paul C Driscoll; Frank Sobott; Anastasia J Callaghan
Journal:  J Mol Biol       Date:  2012-04-03       Impact factor: 5.469

Review 9.  Cycling of RNAs on Hfq.

Authors:  E Gerhart H Wagner
Journal:  RNA Biol       Date:  2013-03-06       Impact factor: 4.652

Review 10.  Lsm proteins and Hfq: Life at the 3' end.

Authors:  Carol J Wilusz; Jeffrey Wilusz
Journal:  RNA Biol       Date:  2013-02-07       Impact factor: 4.652

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  122 in total

1.  Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation.

Authors:  Ira Alexandra Iosub; Robert Willem van Nues; Stuart William McKellar; Karen Jule Nieken; Marta Marchioretto; Brandon Sy; Jai Justin Tree; Gabriella Viero; Sander Granneman
Journal:  Elife       Date:  2020-05-01       Impact factor: 8.140

2.  S1 Domain RNA-Binding Protein CvfD Is a New Posttranscriptional Regulator That Mediates Cold Sensitivity, Phosphate Transport, and Virulence in Streptococcus pneumoniae D39.

Authors:  Dhriti Sinha; Jiaqi J Zheng; Ho-Ching Tiffany Tsui; John D Richardson; Nicholas R De Lay; Malcolm E Winkler
Journal:  J Bacteriol       Date:  2020-08-25       Impact factor: 3.490

Review 3.  New molecular interactions broaden the functions of the RNA chaperone Hfq.

Authors:  Ricardo F Dos Santos; Cecília M Arraiano; José M Andrade
Journal:  Curr Genet       Date:  2019-05-18       Impact factor: 3.886

4.  An Experimental Tool to Estimate the Probability of a Nucleotide Presence in the Crystal Structures of the Nucleotide-Protein Complexes.

Authors:  Maria Nemchinova; Vitaly Balobanov; Ekaterina Nikonova; Natalia Lekontseva; Alisa Mikhaylina; Svetlana Tishchenko; Alexey Nikulin
Journal:  Protein J       Date:  2017-06       Impact factor: 2.371

Review 5.  After the Fact(or): Posttranscriptional Gene Regulation in Enterohemorrhagic Escherichia coli O157:H7.

Authors:  Amber B Sauder; Melissa M Kendall
Journal:  J Bacteriol       Date:  2018-09-10       Impact factor: 3.490

Review 6.  Post-transcriptional regulation of type III secretion in plant and animal pathogens.

Authors:  Kayley H Schulmeyer; Timothy L Yahr
Journal:  Curr Opin Microbiol       Date:  2017-02-10       Impact factor: 7.934

Review 7.  RNA Localization in Bacteria.

Authors:  Jingyi Fei; Cynthia M Sharma
Journal:  Microbiol Spectr       Date:  2018-09

Review 8.  RNA silencing in plant symbiotic bacteria: Insights from a protein-centric view.

Authors:  José I Jiménez-Zurdo; Marta Robledo
Journal:  RNA Biol       Date:  2017-09-13       Impact factor: 4.652

9.  Classic Spotlight: Hfq, from a Specific Host Factor for Phage Replication to a Global Player in Riboregulation.

Authors:  Anke Becker
Journal:  J Bacteriol       Date:  2016-08-11       Impact factor: 3.490

Review 10.  Synthetic small regulatory RNAs in microbial metabolic engineering.

Authors:  Wen-Hai Xie; Hong-Kuan Deng; Jie Hou; Li-Juan Wang
Journal:  Appl Microbiol Biotechnol       Date:  2020-11-17       Impact factor: 4.813

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