Literature DB >> 26906420

Precision autophagy directed by receptor regulators - emerging examples within the TRIM family.

Tomonori Kimura1, Michael Mandell2, Vojo Deretic1.   

Abstract

Selective autophagy entails cooperation between target recognition and assembly of the autophagic apparatus. Target recognition is conducted by receptors that often recognize tags, such as ubiquitin and galectins, although examples of selective autophagy independent of these tags are emerging. It is less known how receptors cooperate with the upstream autophagic regulators, beyond the well-characterized association of receptors with Atg8 or its homologs, such as LC3B (encoded by MAP1LC3B), on autophagic membranes. The molecular details of the emerging role in autophagy of the family of proteins called TRIMs shed light on the coordination between cargo recognition and the assembly and activation of the principal autophagy regulators. In their autophagy roles, TRIMs act both as receptors and as platforms ('receptor regulators') for the assembly of the core autophagy regulators, such as ULK1 and Beclin 1 in their activated state. As autophagic receptors, TRIMs can directly recognize endogenous or exogenous targets, obviating a need for intermediary autophagic tags, such as ubiquitin and galectins. The receptor and regulatory features embodied within the same entity allow TRIMs to govern cargo degradation in a highly exact process termed 'precision autophagy'.
© 2016. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Autophagy; Receptor regulators; TRIMs

Mesh:

Substances:

Year:  2016        PMID: 26906420      PMCID: PMC6518167          DOI: 10.1242/jcs.163758

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  186 in total

1.  LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.

Authors:  Y Kabeya; N Mizushima; T Ueno; A Yamamoto; T Kirisako; T Noda; E Kominami; Y Ohsumi; T Yoshimori
Journal:  EMBO J       Date:  2000-11-01       Impact factor: 11.598

2.  PML regulates p53 acetylation and premature senescence induced by oncogenic Ras.

Authors:  M Pearson; R Carbone; C Sebastiani; M Cioce; M Fagioli; S Saito; Y Higashimoto; E Appella; S Minucci; P P Pandolfi; P G Pelicci
Journal:  Nature       Date:  2000-07-13       Impact factor: 49.962

3.  Distinct classes of phosphatidylinositol 3'-kinases are involved in signaling pathways that control macroautophagy in HT-29 cells.

Authors:  A Petiot; E Ogier-Denis; E F Blommaart; A J Meijer; P Codogno
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

4.  GNIP, a novel protein that binds and activates glycogenin, the self-glucosylating initiator of glycogen biosynthesis.

Authors:  Alexander V Skurat; Amy D Dietrich; Lanmin Zhai; Peter J Roach
Journal:  J Biol Chem       Date:  2002-03-26       Impact factor: 5.157

5.  Spring, a novel RING finger protein that regulates synaptic vesicle exocytosis.

Authors:  Y Li; L S Chin; C Weigel; L Li
Journal:  J Biol Chem       Date:  2001-08-27       Impact factor: 5.157

6.  SS-56, a novel cellular target of autoantibody responses in Sjögren syndrome and systemic lupus erythematosus.

Authors:  O Billaut-Mulot; C Cocude; V Kolesnitchenko; M J Truong; E K Chan; E Hachula; X de la Tribonnière; A Capron; G M Bahr
Journal:  J Clin Invest       Date:  2001-09       Impact factor: 14.808

7.  Induction of autophagy and inhibition of tumorigenesis by beclin 1.

Authors:  X H Liang; S Jackson; M Seaman; K Brown; B Kempkes; H Hibshoosh; B Levine
Journal:  Nature       Date:  1999-12-09       Impact factor: 49.962

8.  The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.

Authors:  Matthew Stremlau; Christopher M Owens; Michel J Perron; Michael Kiessling; Patrick Autissier; Joseph Sodroski
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

9.  The tripartite motif family identifies cell compartments.

Authors:  A Reymond; G Meroni; A Fantozzi; G Merla; S Cairo; L Luzi; D Riganelli; E Zanaria; S Messali; S Cainarca; A Guffanti; S Minucci; P G Pelicci; A Ballabio
Journal:  EMBO J       Date:  2001-05-01       Impact factor: 11.598

10.  A Method to Identify p62's UBA Domain Interacting Proteins.

Authors:  Julia W. Pridgeon; Thangiah Geetha; Marie W. Wooten
Journal:  Biol Proced Online       Date:  2003-12-12       Impact factor: 3.244

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  54 in total

1.  Dedicated SNAREs and specialized TRIM cargo receptors mediate secretory autophagy.

Authors:  Tomonori Kimura; Jingyue Jia; Suresh Kumar; Seong Won Choi; Yuexi Gu; Michal Mudd; Nicolas Dupont; Shanya Jiang; Ryan Peters; Farzin Farzam; Ashish Jain; Keith A Lidke; Christopher M Adams; Terje Johansen; Vojo Deretic
Journal:  EMBO J       Date:  2016-12-08       Impact factor: 11.598

Review 2.  Target acquired: Selective autophagy in cardiometabolic disease.

Authors:  Trent D Evans; Ismail Sergin; Xiangyu Zhang; Babak Razani
Journal:  Sci Signal       Date:  2017-02-28       Impact factor: 8.192

Review 3.  Molecular definitions of autophagy and related processes.

Authors:  Lorenzo Galluzzi; Eric H Baehrecke; Andrea Ballabio; Patricia Boya; José Manuel Bravo-San Pedro; Francesco Cecconi; Augustine M Choi; Charleen T Chu; Patrice Codogno; Maria Isabel Colombo; Ana Maria Cuervo; Jayanta Debnath; Vojo Deretic; Ivan Dikic; Eeva-Liisa Eskelinen; Gian Maria Fimia; Simone Fulda; David A Gewirtz; Douglas R Green; Malene Hansen; J Wade Harper; Marja Jäättelä; Terje Johansen; Gabor Juhasz; Alec C Kimmelman; Claudine Kraft; Nicholas T Ktistakis; Sharad Kumar; Beth Levine; Carlos Lopez-Otin; Frank Madeo; Sascha Martens; Jennifer Martinez; Alicia Melendez; Noboru Mizushima; Christian Münz; Leon O Murphy; Josef M Penninger; Mauro Piacentini; Fulvio Reggiori; David C Rubinsztein; Kevin M Ryan; Laura Santambrogio; Luca Scorrano; Anna Katharina Simon; Hans-Uwe Simon; Anne Simonsen; Nektarios Tavernarakis; Sharon A Tooze; Tamotsu Yoshimori; Junying Yuan; Zhenyu Yue; Qing Zhong; Guido Kroemer
Journal:  EMBO J       Date:  2017-06-08       Impact factor: 11.598

Review 4.  Autophagy and kidney inflammation.

Authors:  Tomonori Kimura; Yoshitaka Isaka; Tamotsu Yoshimori
Journal:  Autophagy       Date:  2017-04-25       Impact factor: 16.016

Review 5.  Autophagy in leukocytes and other cells: mechanisms, subsystem organization, selectivity, and links to innate immunity.

Authors:  Vojo Deretic
Journal:  J Leukoc Biol       Date:  2016-08-04       Impact factor: 4.962

6.  p62/SQSTM1 and Selective Autophagy in Cardiometabolic Diseases.

Authors:  Se-Jin Jeong; Xiangyu Zhang; Astrid Rodriguez-Velez; Trent D Evans; Babak Razani
Journal:  Antioxid Redox Signal       Date:  2019-02-11       Impact factor: 8.401

Review 7.  TRIMs: selective recruitment at different steps of the NF-κB pathway-determinant of activation or resolution of inflammation.

Authors:  Milton Roy; Rajesh Singh
Journal:  Cell Mol Life Sci       Date:  2021-07-20       Impact factor: 9.261

8.  TRIMs and Galectins Globally Cooperate and TRIM16 and Galectin-3 Co-direct Autophagy in Endomembrane Damage Homeostasis.

Authors:  Santosh Chauhan; Suresh Kumar; Ashish Jain; Marisa Ponpuak; Michal H Mudd; Tomonori Kimura; Seong Won Choi; Ryan Peters; Michael Mandell; Jack-Ansgar Bruun; Terje Johansen; Vojo Deretic
Journal:  Dev Cell       Date:  2016-09-29       Impact factor: 12.270

9.  TRIM17 contributes to autophagy of midbodies while actively sparing other targets from degradation.

Authors:  Michael A Mandell; Ashish Jain; Suresh Kumar; Moriah J Castleman; Tahira Anwar; Eeva-Liisa Eskelinen; Terje Johansen; Rytis Prekeris; Vojo Deretic
Journal:  J Cell Sci       Date:  2016-08-25       Impact factor: 5.285

Review 10.  Inflammasomes: a preclinical assessment of targeting in atherosclerosis.

Authors:  Jeremiah Stitham; Astrid Rodriguez-Velez; Xiangyu Zhang; Se-Jin Jeong; Babak Razani
Journal:  Expert Opin Ther Targets       Date:  2020-08-06       Impact factor: 6.902

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