Literature DB >> 26900152

Insight into Structure-Function Relationships and Inhibition of the Fatty Acyl-AMP Ligase (FadD32) Orthologs from Mycobacteria.

Valérie Guillet1, Ségolène Galandrin2, Laurent Maveyraud2, Simon Ladevèze2, Vincent Mariaule2, Cécile Bon2, Nathalie Eynard2, Mamadou Daffé2, Hedia Marrakchi3, Lionel Mourey4.   

Abstract

Mycolic acids are essential components of the mycobacterial cell envelope, and their biosynthetic pathway is one of the targets of first-line antituberculous drugs. This pathway contains a number of potential targets, including some that have been identified only recently and have yet to be explored. One such target, FadD32, is required for activation of the long meromycolic chain and is essential for mycobacterial growth. We report here an in-depth biochemical, biophysical, and structural characterization of four FadD32 orthologs, including the very homologous enzymes fromMycobacterium tuberculosisandMycobacterium marinum Determination of the structures of two complexes with alkyl adenylate inhibitors has provided direct information, with unprecedented detail, about the active site of the enzyme and the associated hydrophobic tunnel, shedding new light on structure-function relationships and inhibition mechanisms by alkyl adenylates and diarylated coumarins. This work should pave the way for the rational design of inhibitors of FadD32, a highly promising drug target.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  crystal structure; drug design; enzyme inhibitor; fatty acyl ACP-synthase; fatty acyl-AMP ligase; mycobacteria; tuberculosis

Mesh:

Substances:

Year:  2016        PMID: 26900152      PMCID: PMC4825004          DOI: 10.1074/jbc.M115.712612

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  47 in total

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Authors:  Mario Raviglione; Ben Marais; Katherine Floyd; Knut Lönnroth; Haileyesus Getahun; Giovanni B Migliori; Anthony D Harries; Paul Nunn; Christian Lienhardt; Steve Graham; Jeremiah Chakaya; Karin Weyer; Stewart Cole; Stefan H E Kaufmann; Alimuddin Zumla
Journal:  Lancet       Date:  2012-05-19       Impact factor: 79.321

2.  Structures of Mycobacterium tuberculosis FadD10 protein reveal a new type of adenylate-forming enzyme.

Authors:  Zhen Liu; Thomas R Ioerger; Feng Wang; James C Sacchettini
Journal:  J Biol Chem       Date:  2013-04-26       Impact factor: 5.157

3.  Structure of PA1221, a nonribosomal peptide synthetase containing adenylation and peptidyl carrier protein domains.

Authors:  Carter A Mitchell; Ce Shi; Courtney C Aldrich; Andrew M Gulick
Journal:  Biochemistry       Date:  2012-04-03       Impact factor: 3.162

4.  Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer.

Authors:  Yuko Hisanaga; Hideo Ago; Noriko Nakagawa; Keisuke Hamada; Koh Ida; Masaki Yamamoto; Tetsuya Hori; Yasuhiro Arii; Mitsuaki Sugahara; Seiki Kuramitsu; Shigeyuki Yokoyama; Masashi Miyano
Journal:  J Biol Chem       Date:  2004-05-15       Impact factor: 5.157

5.  Structural characterization of a 140 degrees domain movement in the two-step reaction catalyzed by 4-chlorobenzoate:CoA ligase.

Authors:  Albert S Reger; Rui Wu; Debra Dunaway-Mariano; Andrew M Gulick
Journal:  Biochemistry       Date:  2008-07-12       Impact factor: 3.162

6.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

7.  A polyketide synthase catalyzes the last condensation step of mycolic acid biosynthesis in mycobacteria and related organisms.

Authors:  Damien Portevin; Célia De Sousa-D'Auria; Christine Houssin; Christine Grimaldi; Mohamed Chami; Mamadou Daffé; Christophe Guilhot
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-26       Impact factor: 11.205

8.  Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria.

Authors:  Omita A Trivedi; Pooja Arora; Vijayalakshmi Sridharan; Rashmi Tickoo; Debasisa Mohanty; Rajesh S Gokhale
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  9 in total

1.  Discovery of heterocyclic replacements for the coumarin core of anti-tubercular FadD32 inhibitors.

Authors:  Chao Fang; Katie K Lee; Raymond Nietupski; Robert H Bates; Raquel Fernandez-Menendez; Eva Maria Lopez-Roman; Laura Guijarro-Lopez; Yunxing Yin; Zuozhong Peng; James E Gomez; Stewart Fisher; David Barros-Aguirre; Brian K Hubbard; Michael H Serrano-Wu; Deborah T Hung
Journal:  Bioorg Med Chem Lett       Date:  2018-09-29       Impact factor: 2.823

2.  Development of small-molecule inhibitors of fatty acyl-AMP and fatty acyl-CoA ligases in Mycobacterium tuberculosis.

Authors:  Marzena Baran; Kimberly D Grimes; Paul A Sibbald; Peng Fu; Helena I M Boshoff; Daniel J Wilson; Courtney C Aldrich
Journal:  Eur J Med Chem       Date:  2020-06-13       Impact factor: 6.514

3.  Ser/Thr Phosphorylation Regulates the Fatty Acyl-AMP Ligase Activity of FadD32, an Essential Enzyme in Mycolic Acid Biosynthesis.

Authors:  Nguyen-Hung Le; Virginie Molle; Nathalie Eynard; Mathieu Miras; Alexandre Stella; Fabienne Bardou; Ségolène Galandrin; Valérie Guillet; Gwenaëlle André-Leroux; Marco Bellinzoni; Pedro Alzari; Lionel Mourey; Odile Burlet-Schiltz; Mamadou Daffé; Hedia Marrakchi
Journal:  J Biol Chem       Date:  2016-09-02       Impact factor: 5.157

4.  Structure of the Essential Mtb FadD32 Enzyme: A Promising Drug Target for Treating Tuberculosis.

Authors:  Misty L Kuhn; Evan Alexander; George Minasov; Holland J Page; Zdzislaw Warwrzak; Ludmilla Shuvalova; Kristin J Flores; Daniel J Wilson; Ce Shi; Courtney C Aldrich; Wayne F Anderson
Journal:  ACS Infect Dis       Date:  2016-07-01       Impact factor: 5.084

5.  Mycobacterium marinum Degrades Both Triacylglycerols and Phospholipids from Its Dictyostelium Host to Synthesise Its Own Triacylglycerols and Generate Lipid Inclusions.

Authors:  Caroline Barisch; Thierry Soldati
Journal:  PLoS Pathog       Date:  2017-01-19       Impact factor: 6.823

6.  Accuracy of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Identification of Mycobacteria: a systematic review and meta-analysis.

Authors:  Yan Cao; Lei Wang; Ping Ma; Wenting Fan; Bing Gu; Shaoqing Ju
Journal:  Sci Rep       Date:  2018-03-07       Impact factor: 4.379

7.  The carbon chain-selective adenylation enzyme TamA: the missing link between fatty acid and pyrrole natural product biosynthesis.

Authors:  Piera M Marchetti; Van Kelly; Joanna P Simpson; Mairi Ward; Dominic J Campopiano
Journal:  Org Biomol Chem       Date:  2018-04-18       Impact factor: 3.876

8.  In Silico Drug Repurposing Approach: Investigation of Mycobacterium tuberculosis FadD32 Targeted by FDA-Approved Drugs.

Authors:  Nolwazi Thobeka Portia Ngidi; Kgothatso Eugene Machaba; Ndumiso Nhlakanipho Mhlongo
Journal:  Molecules       Date:  2022-01-20       Impact factor: 4.411

9.  Unveiling the Biosynthetic Pathway for Short Mycolic Acids in Nontuberculous Mycobacteria: Mycobacterium smegmatis MSMEG_4301 and Its Ortholog Mycobacterium abscessus MAB_1915 Are Essential for the Synthesis of α'-Mycolic Acids.

Authors:  Cecilia B Di Capua; Juan M Belardinelli; Hugo A Carignano; María V Buchieri; Cristian A Suarez; Héctor R Morbidoni
Journal:  Microbiol Spectr       Date:  2022-07-07
  9 in total

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