| Literature DB >> 26894297 |
Ari W Satyagraha1, Arkasha Sadhewa1, Rosalie Elvira1, Iqbal Elyazar2, Denny Feriandika1, Ungke Antonjaya2, Damian Oyong2, Decy Subekti2, Ismail E Rozi1, Gonzalo J Domingo3, Alida R Harahap1, J Kevin Baird2,4.
Abstract
BACKGROUND: Patients infected by Plasmodium vivax or Plasmodium ovale suffer repeated clinical attacks without primaquine therapy against latent stages in liver. Primaquine causes seriously threatening acute hemolytic anemia in patients having inherited glucose-6-phosphate dehydrogenase (G6PD) deficiency. Access to safe primaquine therapy hinges upon the ability to confirm G6PD normal status. CareStart G6PD, a qualitative G6PD rapid diagnostic test (G6PD RDT) intended for use at point-of-care in impoverished rural settings where most malaria patients live, was evaluated. METHODOLOGY/PRINCIPALEntities:
Mesh:
Year: 2016 PMID: 26894297 PMCID: PMC4760930 DOI: 10.1371/journal.pntd.0004457
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Fig 1Geographic location of the study site.
Fig 2Flow-chart of the study in Panenggo Ede where those tests performed in field or field laboratory were confirmed by DNA analysis at the Eijkman Institute in Jakarta, Indonesia.
Fig 3Photographs illustrating visual test outcomes for the G6PD RDT (top) and FST (bottom).
For FST, samples were spotted at time 0, 5 and 10 minutes interval and the dark spots were considered deficient (D) and the bright ones were considered normal (N). RDT with purple color was considered normal (N) and no color was considered deficient (D).
PCR primers and RFLP conditions for G6PD variants common in Southwest Sumba Regency and PCR primers for detecting SAO, HbE and α thalassemia.
| Variant | Primer | Primer Sequence (5’ → 3’) | Expected PCR Product (bp) | RE | Expected Result (bp) | References | |
|---|---|---|---|---|---|---|---|
| Deficient | Normal | ||||||
| VL-9F | CAG CCT GGG GCA GTG TCT GTG CT | 366 | 366 | 346 | Our design | ||
| VL-9R | GCG GTT GGC CTG TGA CCC CTG GTG | 20 | |||||
| VC-9F | TGG CTT TCT CTC AGG TCT AG | 126 | 106 | 126 | Nuchprayoon | ||
| VC-9R | GTC GTC CAG GTA CCC TTT GGG G | 20 | |||||
| CT-9F | CAA GGA GCC CAT TCT CTC CCT T | 208 | 100 | 130 | Gandomani | ||
| CT-9R | TTC TCC ACA TAG AGG AGG ACG GCT GCC AAA GT | 78 | 78 | ||||
| 30 | |||||||
| KP-9F | ACG TGA AGC TCC CTG ACG C | 227 | 206 | 227 | Laosombat | ||
| KP-9R | GTG CAG CAG TGG GGT GAA CAT A | 21 | |||||
| SAO | OVF 1098 | GGG CCC AGA TGA CCC TCT TGC | 175 (148 for SAO) | - | - | - | Jarolim |
| OVR 1272 | GCC GAA GGT GAT GGC GGG TG | ||||||
| HbE | Com C | ACC TCA CCC TGT GGA GCC AC | 293 | 122 | 106 | Pramoodjago | |
| TLR 62320 | CTA TTG GTC TCC TTA AAC CTG TCT TGT AAC CTT GCT A | 106 | 60 | ||||
| alpha Thalassemia (Multiplex PCR—2 gene deletion) | SEA-alpha F | CTC TGT GTT CTC AGT ATT GGA GGG AAG GAG | 1110 660 | - | - | Liu | |
| SEA-alpha R | ATA TAT GGG TCT GGA AGT GTA ACC CTC CCA | ||||||
| alpha R | TGA AGA GCC TGC AGG ACC AGG TCA GTG ACC G | ||||||
| FILL-alpha F | AAG AGA ATA AAC CAC CCA ATT TTT AAA TGG GCA | 550 | - | - | |||
| FILL-alpha R | GAG ATA ATA ACC TTT ATC TGC CAC ATG TAG CAA | ||||||
| THAI-alpha F | CAC GAG TAA AAC ATC AAG TAC ACT CCA GCC | 411 | - | - | |||
| THAI-alpha R | TGG ATC TGC ACC TCT GGG TAG GTT CTG TAC C | ||||||
| α Thalassemia (Multiplex PCR—1 gene deletion) | 2/3P | TGT TGG CAC ATT CCG GGA CAG | 1940 (normal) | - | - | Setianingsih | |
| XY1 | GCG CCG AGC CTG GCC AAA CCA TCA CTT TTC | 2220 (-3.7 kb deletion) | |||||
| 3R1 | TGC ATC CTC AAA GCA CTC TAG GGT CCA GCG T | 1673 (-4.2 kb deletion) | |||||
| SA3P | TAA GCT AGA GCA TTG GTG GTC ATG C | ||||||
| XYHA | GAA GTA CGT CCG ACC AGC TTA GCC A | ||||||
RE is restriction enzyme; bp is base pair.
Fig 4Chart illustrating the rationale for assessing diagnostic performance of qualitative G6PD screening devices in the context of a clinical decision to offer or withhold primaquine therapy in patients with P. vivax malaria.
Each classification (bold font top), clinical outcome (normal font middle), and risk or benefit (italics bottom) of diagnostic performance appears in each box of classification.
Malaria and anemia in the community.
| Criteria | Total Subject | Female | Male |
|---|---|---|---|
| 15 | 7 | 8 | |
| 8 | 3 | 5 | |
| 5 | 2 | 3 | |
| Mix (Pf + Pv) | 2 | 2 | 0 |
| 610 | 350 | 260 | |
| Mean (range) | 13.2 (6.0–22.8) | 12.8 (6.0–22.8) | 13.8 (6.9–20.2) |
| < 8 g/dL | 3 | 2 | 1 |
| Mean (range) | 6.9 (6.0–7.8) | 6.9 (6.0–7.8) | 6.9 |
| >10 g/dL | 607 | 348 | 259 |
| Mean (range) | 13.4 (10.3–22.8) | 13.0 (10.3–22.8) | 13.9 (10.3–20.2) |
Fig 5Variants of G6PD found in Panenggo Ede.
(A) Bar graph showing different variants found in males (blue) and females (red) and (B) showed the boxplot showing the activity of these variants in comparison to normal. VL, VC, CT and CO stands for Vanua Lava, Viangchan, Chatham and Coimbra Shunde variant of G6PD respectively. Black line across each box plot is the median for each group. * Indicated that the group contained homozygous females as well.
Fig 6Graphs illustrate diagnostic outcomes for the G6PD RDT (left) and FST (right) among males (top) and females (bottom) across quantitative G6PD activity values for each subject.
A qualitative test classification as deficient is shown in red, and green for normal. Vertical lines within each identify specific diagnostic thresholds (10%, 20%, 30%, 60% and 100%) employed to calculate diagnostic performance characteristics.
G6PD diagnostic tests analyzed in 610 subjects living in Panenggo Ede village, Southwest Sumba, tested against G6PD gold standard test.
| Cut off | Performance indicator | Male | P-value | Female | P-value | ||
|---|---|---|---|---|---|---|---|
| RDT | FST | RDT | FST | ||||
| 10% | Sensitivity | 100.0 (80.5–100) | 88.2 (63.6–98.5) | 0.48 | 100.0 (29.2–100) | 100.0 (29.2–100) | 1.0 |
| Specificity | 95.9 (92.6–98.0) | 89.7 (85.2–93.2) | 92.2 (88.9–94.8) | 91.4 (87.9–94.1) | 0.78 | ||
| DPV | 63.0 (42.4–80.6) | 37.5 (22.7–54.2) | 0.05 | 10.0 (2.1–26.5) | 9.1 (1.9–24.3) | 1.0 | |
| NPV | 100.0 (98.4–100) | 99.1 (96.8–99.9) | 0.23 | 100.0 (98.9–100) | 100.0 (98.8–100) | 1.0 | |
| 30% | Sensitivity | 100.0 (85.8–100) | 91.7 (73–99) | 0.49 | 83.3 (35.9–99.6) | 100.0 (54.1–100) | 1.0 |
| Specificity | 98.7 (96.3–99.7) | 92.4 (88.2–95.4) | 92.7 (89.5–95.2) | 92.2 (88.8–94.8) | 0.89 | ||
| DPV | 88.9 (70.8–97.6) | 55.0 (38.5–70.7) | 16.7 (5.6–34.7) | 18.2 (7–35.5) | 1.0 | ||
| NPV | 100.0 (98.4–100) | 99.1 (96.8–99.9) | 0.24 | 99.7 (98.3–100) | 100.0 (98.8–100) | 1.0 | |
| 60% | Sensitivity | 96.0 (79.6–99.9) | 88.0 (68.8–97.5) | 0.61 | 44.0 (24.4–65.1) | 60.0 (38.7–78.9) | 0.39 |
| Specificity | 98.7 (96.3–99.7) | 92.3 (88.2–95.4) | 94.2 (91–96.4) | 94.5 (91.4–96.7) | 1.0 | ||
| DPV | 88.9 (70.8–97.6) | 55.0 (38.5–70.7) | 36.7 (19.9–56.1) | 45.5 (28.1–63.6) | 0.61 | ||
| NPV | 99.6 (97.6–100) | 98.6 (96.1–99.7) | 0.36 | 95.6 (92.8–97.6) | 96.8 (94.3–98.5) | 0.53 | |
1 Proportion and 95% confidence interval.
2 CareStart RDT (Access Bio) and tested in field setting with temperature 28–34°C and humidity between 55–76%.
3 FST (Trinity Biotech) and tested in field laboratory with temperature 26–29°C.