Literature DB >> 26886794

Structural basis for activity regulation of MLL family methyltransferases.

Yanjing Li1,2, Jianming Han1,2, Yuebin Zhang3, Fang Cao4, Zhijun Liu1,2, Shuai Li5, Jian Wu1,2, Chunyi Hu1,2, Yan Wang1,2, Jin Shuai1,2, Juan Chen1,2, Liaoran Cao3, Dangsheng Li6, Pan Shi7, Changlin Tian7,8, Jian Zhang5, Yali Dou4, Guohui Li3, Yong Chen1,2, Ming Lei1,2.   

Abstract

The mixed lineage leukaemia (MLL) family of proteins (including MLL1-MLL4, SET1A and SET1B) specifically methylate histone 3 Lys4, and have pivotal roles in the transcriptional regulation of genes involved in haematopoiesis and development. The methyltransferase activity of MLL1, by itself severely compromised, is stimulated by the three conserved factors WDR5, RBBP5 and ASH2L, which are shared by all MLL family complexes. However, the molecular mechanism of how these factors regulate the activity of MLL proteins still remains poorly understood. Here we show that a minimized human RBBP5-ASH2L heterodimer is the structural unit that interacts with and activates all MLL family histone methyltransferases. Our structural, biochemical and computational analyses reveal a two-step activation mechanism of MLL family proteins. These findings provide unprecedented insights into the common theme and functional plasticity in complex assembly and activity regulation of MLL family methyltransferases, and also suggest a universal regulation mechanism for most histone methyltransferases.

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Year:  2016        PMID: 26886794      PMCID: PMC5125619          DOI: 10.1038/nature16952

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  41 in total

1.  Structure of the SPRY domain of human Ash2L and its interactions with RbBP5 and DPY30.

Authors:  Yong Chen; Fang Cao; Bingbing Wan; Yali Dou; Ming Lei
Journal:  Cell Res       Date:  2012-01-10       Impact factor: 25.617

2.  CHD8 is an ATP-dependent chromatin remodeling factor that regulates beta-catenin target genes.

Authors:  Brandi A Thompson; Véronique Tremblay; Grace Lin; Daniel A Bochar
Journal:  Mol Cell Biol       Date:  2008-03-31       Impact factor: 4.272

Review 3.  Structural and sequence motifs of protein (histone) methylation enzymes.

Authors:  Xiaodong Cheng; Robert E Collins; Xing Zhang
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

4.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

5.  Site-specific ¹⁹F NMR chemical shift and side chain relaxation analysis of a membrane protein labeled with an unnatural amino acid.

Authors:  Pan Shi; Hu Wang; Zhaoyong Xi; Chaowei Shi; Ying Xiong; Changlin Tian
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

6.  Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.

Authors:  Yen-Sin Ang; Su-Yi Tsai; Dung-Fang Lee; Jonathan Monk; Jie Su; Kajan Ratnakumar; Junjun Ding; Yongchao Ge; Henia Darr; Betty Chang; Jianlong Wang; Michael Rendl; Emily Bernstein; Christoph Schaniel; Ihor R Lemischka
Journal:  Cell       Date:  2011-04-07       Impact factor: 41.582

7.  Characterization of a novel WDR5-binding site that recruits RbBP5 through a conserved motif to enhance methylation of histone H3 lysine 4 by mixed lineage leukemia protein-1.

Authors:  Zain Odho; Stacey M Southall; Jon R Wilson
Journal:  J Biol Chem       Date:  2010-08-17       Impact factor: 5.157

8.  Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II.

Authors:  Pengfei Wang; Chengqi Lin; Edwin R Smith; Hong Guo; Brian W Sanderson; Min Wu; Madelaine Gogol; Tara Alexander; Christopher Seidel; Leanne M Wiedemann; Kai Ge; Robb Krumlauf; Ali Shilatifard
Journal:  Mol Cell Biol       Date:  2009-08-24       Impact factor: 4.272

9.  The plasticity of WDR5 peptide-binding cleft enables the binding of the SET1 family of histone methyltransferases.

Authors:  Pamela Zhang; Hwabin Lee; Joseph S Brunzelle; Jean-Francois Couture
Journal:  Nucleic Acids Res       Date:  2012-01-20       Impact factor: 16.971

10.  A small-cell lung cancer genome with complex signatures of tobacco exposure.

Authors:  Erin D Pleasance; Philip J Stephens; Sarah O'Meara; David J McBride; Alison Meynert; David Jones; Meng-Lay Lin; David Beare; King Wai Lau; Chris Greenman; Ignacio Varela; Serena Nik-Zainal; Helen R Davies; Gonzalo R Ordoñez; Laura J Mudie; Calli Latimer; Sarah Edkins; Lucy Stebbings; Lina Chen; Mingming Jia; Catherine Leroy; John Marshall; Andrew Menzies; Adam Butler; Jon W Teague; Jonathon Mangion; Yongming A Sun; Stephen F McLaughlin; Heather E Peckham; Eric F Tsung; Gina L Costa; Clarence C Lee; John D Minna; Adi Gazdar; Ewan Birney; Michael D Rhodes; Kevin J McKernan; Michael R Stratton; P Andrew Futreal; Peter J Campbell
Journal:  Nature       Date:  2009-12-16       Impact factor: 49.962

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  76 in total

Review 1.  Activation and regulation of H2B-Ubiquitin-dependent histone methyltransferases.

Authors:  Evan J Worden; Cynthia Wolberger
Journal:  Curr Opin Struct Biol       Date:  2019-06-21       Impact factor: 6.809

2.  The dynamic conformational landscape of the protein methyltransferase SETD8.

Authors:  Shi Chen; Rafal P Wiewiora; Fanwang Meng; Nicolas Babault; Anqi Ma; Wenyu Yu; Kun Qian; Hao Hu; Hua Zou; Junyi Wang; Shijie Fan; Gil Blum; Fabio Pittella-Silva; Kyle A Beauchamp; Wolfram Tempel; Hualiang Jiang; Kaixian Chen; Robert J Skene; Yujun George Zheng; Peter J Brown; Jian Jin; Cheng Luo; John D Chodera; Minkui Luo
Journal:  Elife       Date:  2019-05-13       Impact factor: 8.140

3.  An enzyme-based biosensor for monitoring and engineering protein stability in vivo.

Authors:  Chang Ren; Xin Wen; Jun Mencius; Shu Quan
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-30       Impact factor: 11.205

Review 4.  Inhibitors of Protein Methyltransferases and Demethylases.

Authors:  H Ümit Kaniskan; Michael L Martini; Jian Jin
Journal:  Chem Rev       Date:  2017-03-24       Impact factor: 60.622

5.  Lysine-specific demethylase 1 cooperates with BRAF-histone deacetylase complex 80 to enhance HIV-1 Tat-mediated transactivation.

Authors:  Yu Liu; Deyu Zhou; Di Qi; Jiabin Feng; Zhou Liu; Yue Hu; Wenyuan Shen; Chang Liu; Xiaohong Kong
Journal:  Virus Genes       Date:  2018-08-13       Impact factor: 2.332

Review 6.  The emerging role of PI3K/AKT-mediated epigenetic regulation in cancer.

Authors:  Jennifer M Spangle; Thomas M Roberts; Jean J Zhao
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-03-14       Impact factor: 10.680

Review 7.  MLL5 (KMT2E): structure, function, and clinical relevance.

Authors:  Xiaoming Zhang; Wisna Novera; Yan Zhang; Lih-Wen Deng
Journal:  Cell Mol Life Sci       Date:  2017-02-10       Impact factor: 9.261

8.  SET domain containing 1B gene is mutated in primary hepatic neuroendocrine tumors.

Authors:  Penghui Yang; Xuanlin Huang; Chengcai Lai; Lin Li; Tieling Li; Peide Huang; Songying Ouyang; Jin Yan; Sijie Cheng; Guanglin Lei; Zhaohai Wang; Linxiang Yu; Zhixian Hong; Ruisheng Li; Hui Dong; Cheng Wang; Yinghao Yu; Xuan Wang; Xianghong Li; Liming Wang; Fudong Lv; Ye Yin; Huanming Yang; Jianxun Song; Qiang Gao; Xiliang Wang; Shaogeng Zhang
Journal:  Int J Cancer       Date:  2019-05-17       Impact factor: 7.396

9.  A comparative analysis of KMT2D missense variants in Kabuki syndrome, cancers and the general population.

Authors:  Víctor Faundes; Geraldine Malone; William G Newman; Siddharth Banka
Journal:  J Hum Genet       Date:  2018-11-20       Impact factor: 3.172

10.  Targeted Disruption of the Interaction between WD-40 Repeat Protein 5 (WDR5) and Mixed Lineage Leukemia (MLL)/SET1 Family Proteins Specifically Inhibits MLL1 and SETd1A Methyltransferase Complexes.

Authors:  Nilda L Alicea-Velázquez; Stephen A Shinsky; Daniel M Loh; Jeong-Heon Lee; David G Skalnik; Michael S Cosgrove
Journal:  J Biol Chem       Date:  2016-08-25       Impact factor: 5.157

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