Literature DB >> 26885694

Design and Structural Characterization of Potent and Selective Inhibitors of Phosphatidylinositol 4 Kinase IIIβ.

Florentine U Rutaganira1, Melissa L Fowler2, Jacob A McPhail2, Michael A Gelman3, Khanh Nguyen3, Anming Xiong3, Gillian L Dornan2, Brandon Tavshanjian1, Jeffrey S Glenn3,4, Kevan M Shokat1, John E Burke2.   

Abstract

Type III phosphatidylinositol 4-kinase (PI4KIIIβ) is an essential enzyme in mediating membrane trafficking and is implicated in a variety of pathogenic processes. It is a key host factor mediating replication of RNA viruses. The design of potent and specific inhibitors of this enzyme will be essential to define its cellular roles and may lead to novel antiviral therapeutics. We previously reported the PI4K inhibitor PIK93, and this compound has defined key functions of PI4KIIIβ. However, this compound showed high cross reactivity with class I and III PI3Ks. Using structure-based drug design, we have designed novel potent and selective (>1000-fold over class I and class III PI3Ks) PI4KIIIβ inhibitors. These compounds showed antiviral activity against hepatitis C virus. The co-crystal structure of PI4KIIIβ bound to one of the most potent compounds reveals the molecular basis of specificity. This work will be vital in the design of novel PI4KIIIβ inhibitors, which may play significant roles as antiviral therapeutics.

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Year:  2016        PMID: 26885694      PMCID: PMC5289284          DOI: 10.1021/acs.jmedchem.5b01311

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  42 in total

1.  Potent, selective small molecule inhibitors of type III phosphatidylinositol-4-kinase α- but not β-inhibit the phosphatidylinositol signaling cascade and cancer cell proliferation.

Authors:  Michael J Waring; David M Andrews; Paul F Faulder; Vikki Flemington; Jennifer C McKelvie; Sarita Maman; Marian Preston; Piotr Raubo; Graeme R Robb; Karen Roberts; Rachel Rowlinson; James M Smith; Martin E Swarbrick; Iris Treinies; Jon J G Winter; Robert J Wood
Journal:  Chem Commun (Camb)       Date:  2013-12-24       Impact factor: 6.222

2.  Phosphatidylinositol 4-kinase III beta is essential for replication of human rhinovirus and its inhibition causes a lethal phenotype in vivo.

Authors:  Catherine Spickler; Julie Lippens; Marie-Kristine Laberge; Sophie Desmeules; Édith Bellavance; Michel Garneau; Tim Guo; Oliver Hucke; Pieter Leyssen; Johan Neyts; Fréderic H Vaillancourt; Anne Décor; Jeff O'Meara; Michael Franti; Annick Gauthier
Journal:  Antimicrob Agents Chemother       Date:  2013-05-06       Impact factor: 5.191

3.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

4.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

5.  Maintenance of hormone-sensitive phosphoinositide pools in the plasma membrane requires phosphatidylinositol 4-kinase IIIalpha.

Authors:  Andras Balla; Yeun Ju Kim; Peter Varnai; Zsofia Szentpetery; Zachary Knight; Kevan M Shokat; Tamas Balla
Journal:  Mol Biol Cell       Date:  2007-12-12       Impact factor: 4.138

6.  A pharmacological map of the PI3-K family defines a role for p110alpha in insulin signaling.

Authors:  Zachary A Knight; Beatriz Gonzalez; Morri E Feldman; Eli R Zunder; David D Goldenberg; Olusegun Williams; Robbie Loewith; David Stokoe; Andras Balla; Balazs Toth; Tamas Balla; William A Weiss; Roger L Williams; Kevan M Shokat
Journal:  Cell       Date:  2006-04-27       Impact factor: 41.582

7.  How good are my data and what is the resolution?

Authors:  Philip R Evans; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

Review 8.  Signaling by the phosphoinositide 3-kinase family in immune cells.

Authors:  Klaus Okkenhaug
Journal:  Annu Rev Immunol       Date:  2013-01-16       Impact factor: 28.527

9.  DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research.

Authors:  Catherine Y Seiler; Jin G Park; Amit Sharma; Preston Hunter; Padmini Surapaneni; Casey Sedillo; James Field; Rhys Algar; Andrea Price; Jason Steel; Andrea Throop; Michael Fiacco; Joshua LaBaer
Journal:  Nucleic Acids Res       Date:  2013-11-12       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  17 in total

1.  VAMP associated proteins are required for autophagic and lysosomal degradation by promoting a PtdIns4P-mediated endosomal pathway.

Authors:  Dongxue Mao; Guang Lin; Burak Tepe; Zhongyuan Zuo; Kai Li Tan; Mumine Senturk; Sheng Zhang; Benjamin R Arenkiel; Marco Sardiello; Hugo J Bellen
Journal:  Autophagy       Date:  2019-02-20       Impact factor: 16.016

Review 2.  Dynamic structural biology at the protein membrane interface.

Authors:  John E Burke
Journal:  J Biol Chem       Date:  2019-01-28       Impact factor: 5.157

3.  Foot-and-mouth disease virus genome replication is unaffected by inhibition of type III phosphatidylinositol-4-kinases.

Authors:  Eleni-Anna Loundras; Morgan R Herod; Mark Harris; Nicola J Stonehouse
Journal:  J Gen Virol       Date:  2016-06-20       Impact factor: 3.891

Review 4.  Lipid Tales of Viral Replication and Transmission.

Authors:  Nihal Altan-Bonnet
Journal:  Trends Cell Biol       Date:  2016-11-09       Impact factor: 20.808

5.  PI4KIIIβ is a therapeutic target in chromosome 1q-amplified lung adenocarcinoma.

Authors:  Xiaochao Tan; Priyam Banerjee; Edward A Pham; Florentine U N Rutaganira; Kaustabh Basu; Neus Bota-Rabassedas; Hou-Fu Guo; Caitlin L Grzeskowiak; Xin Liu; Jiang Yu; Lei Shi; David H Peng; B Leticia Rodriguez; Jiaqi Zhang; Veronica Zheng; Dzifa Y Duose; Luisa M Solis; Barbara Mino; Maria Gabriela Raso; Carmen Behrens; Ignacio I Wistuba; Kenneth L Scott; Mark Smith; Khanh Nguyen; Grace Lam; Ingrid Choong; Abhijit Mazumdar; Jamal L Hill; Don L Gibbons; Powel H Brown; William K Russell; Kevan Shokat; Chad J Creighton; Jeffrey S Glenn; Jonathan M Kurie
Journal:  Sci Transl Med       Date:  2020-01-22       Impact factor: 17.956

6.  Structural insights into Acyl-coenzyme A binding domain containing 3 (ACBD3) protein hijacking by picornaviruses.

Authors:  Dominika Chalupska; Bartosz Różycki; Martin Klima; Evzen Boura
Journal:  Protein Sci       Date:  2019-10-17       Impact factor: 6.725

7.  Multistep Compositional Remodeling of Supported Lipid Membranes by Interfacially Active Phosphatidylinositol Kinases.

Authors:  Seyed R Tabaei; Feng Guo; Florentine U Rutaganira; Setareh Vafaei; Ingrid Choong; Kevan M Shokat; Jeffrey S Glenn; Nam-Joon Cho
Journal:  Anal Chem       Date:  2016-04-28       Impact factor: 6.986

8.  Design, synthesis, and evaluation of transition-state analogs as inhibitors of the bacterial quorum sensing autoinducer synthase CepI.

Authors:  Erin L Higgins; Julian S Kellner-Rogers; Alexandra M Estanislau; Alec C Esposito; Nora R Vail; Sterling R Payne; Julia G Stockwell; Scott M Ulrich
Journal:  Bioorg Med Chem Lett       Date:  2021-02-23       Impact factor: 2.823

9.  Negative charge and membrane-tethered viral 3B cooperate to recruit viral RNA dependent RNA polymerase 3D pol.

Authors:  Anna Dubankova; Jana Humpolickova; Martin Klima; Evzen Boura
Journal:  Sci Rep       Date:  2017-12-11       Impact factor: 4.379

10.  Novel phosphatidylinositol 4-kinases III beta (PI4KIIIβ) inhibitors discovered by virtual screening using free energy models.

Authors:  Natalie M Colodette; Lucas S Franco; Rodolfo C Maia; Harold H Fokoue; Carlos Mauricio R Sant'Anna; Eliezer J Barreiro
Journal:  J Comput Aided Mol Des       Date:  2020-06-30       Impact factor: 3.686

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