Literature DB >> 26884154

The archaeal Ced system imports DNA.

Marleen van Wolferen1, Alexander Wagner1, Chris van der Does1, Sonja-Verena Albers2.   

Abstract

The intercellular transfer of DNA is a phenomenon that occurs in all domains of life and is a major driving force of evolution. Upon UV-light treatment, cells of the crenarchaeal genus Sulfolobus express Ups pili, which initiate cell aggregate formation. Within these aggregates, chromosomal DNA, which is used for the repair of DNA double-strand breaks, is exchanged. Because so far no clear homologs of bacterial DNA transporters have been identified among the genomes of Archaea, the mechanisms of archaeal DNA transport have remained a puzzling and underinvestigated topic. Here we identify saci_0568 and saci_0748, two genes from Sulfolobus acidocaldarius that are highly induced upon UV treatment, encoding a transmembrane protein and a membrane-bound VirB4/HerA homolog, respectively. DNA transfer assays showed that both proteins are essential for DNA transfer between Sulfolobus cells and act downstream of the Ups pili system. Our results moreover revealed that the system is involved in the import of DNA rather than the export. We therefore propose that both Saci_0568 and Saci_0748 are part of a previously unidentified DNA importer. Given the fact that we found this transporter system to be widely spread among the Crenarchaeota, we propose to name it the Crenarchaeal system for exchange of DNA (Ced). In this study we have for the first time to our knowledge described an archaeal DNA transporter.

Entities:  

Keywords:  Archaea; DNA transport; VirB4; conjugation; type IV pili

Mesh:

Substances:

Year:  2016        PMID: 26884154      PMCID: PMC4780597          DOI: 10.1073/pnas.1513740113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
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2.  Construction of transposon Tn3phoA: its application in defining the membrane topology of the Agrobacterium tumefaciens DNA transfer proteins.

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Journal:  Mol Microbiol       Date:  1998-01       Impact factor: 3.501

3.  Genetic complementation analysis of the Agrobacterium tumefaciens virB operon: virB2 through virB11 are essential virulence genes.

Authors:  B R Berger; P J Christie
Journal:  J Bacteriol       Date:  1994-06       Impact factor: 3.490

4.  Inducible and constitutive promoters for genetic systems in Sulfolobus acidocaldarius.

Authors:  Silvia Berkner; Alexander Wlodkowski; Sonja-Verena Albers; Georg Lipps
Journal:  Extremophiles       Date:  2010-03-12       Impact factor: 2.395

5.  High accuracy operon prediction method based on STRING database scores.

Authors:  Blanca Taboada; Cristina Verde; Enrique Merino
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

6.  Low species barriers in halophilic archaea and the formation of recombinant hybrids.

Authors:  Adit Naor; Pascal Lapierre; Moshe Mevarech; R Thane Papke; Uri Gophna
Journal:  Curr Biol       Date:  2012-06-28       Impact factor: 10.834

7.  Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius.

Authors:  Michaela Wagner; Marleen van Wolferen; Alexander Wagner; Kerstin Lassak; Benjamin H Meyer; Julia Reimann; Sonja-Verena Albers
Journal:  Front Microbiol       Date:  2012-06-13       Impact factor: 5.640

8.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
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9.  SyntTax: a web server linking synteny to prokaryotic taxonomy.

Authors:  Jacques Oberto
Journal:  BMC Bioinformatics       Date:  2013-01-16       Impact factor: 3.169

10.  Responses of hyperthermophilic crenarchaea to UV irradiation.

Authors:  Dorothee Götz; Sonia Paytubi; Stacey Munro; Magnus Lundgren; Rolf Bernander; Malcolm F White
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  23 in total

Review 1.  Mechanisms of gene flow in archaea.

Authors:  Alexander Wagner; Rachel J Whitaker; David J Krause; Jan-Hendrik Heilers; Marleen van Wolferen; Chris van der Does; Sonja-Verena Albers
Journal:  Nat Rev Microbiol       Date:  2017-05-15       Impact factor: 60.633

2.  Increase of positive supercoiling in a hyperthermophilic archaeon after UV irradiation.

Authors:  A Gorlas; R Catchpole; E Marguet; P Forterre
Journal:  Extremophiles       Date:  2018-11-22       Impact factor: 2.395

Review 3.  Small Proteins in Archaea, a Mainly Unexplored World.

Authors:  Katrin Weidenbach; Miriam Gutt; Liam Cassidy; Cynthia Chibani; Ruth A Schmitz
Journal:  J Bacteriol       Date:  2021-09-20       Impact factor: 3.476

Review 4.  The cell biology of archaea.

Authors:  Marleen van Wolferen; Andre Arashiro Pulschen; Buzz Baum; Simonetta Gribaldo; Sonja-Verena Albers
Journal:  Nat Microbiol       Date:  2022-10-17       Impact factor: 30.964

5.  Type IV-Like Pili Facilitate Transformation in Naturally Competent Archaea.

Authors:  Dallas R Fonseca; Mohd Farid Abdul Halim; Matthew P Holten; Kyle C Costa
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

6.  Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.

Authors:  Frank Schult; Thuong N Le; Andreas Albersmeier; Bernadette Rauch; Patrick Blumenkamp; Chris van der Does; Alexander Goesmann; Jörn Kalinowski; Sonja-Verena Albers; Bettina Siebers
Journal:  Nucleic Acids Res       Date:  2018-08-21       Impact factor: 16.971

7.  A conserved hexanucleotide motif is important in UV-inducible promoters in Sulfolobus acidocaldarius.

Authors:  Thuong Ngoc Le; Alexander Wagner; Sonja-Verena Albers
Journal:  Microbiology (Reading)       Date:  2017-05-03       Impact factor: 2.777

8.  A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius.

Authors:  Alvaro Orell; Vanessa Tripp; Victor Aliaga-Tobar; Sonja-Verena Albers; Vinicius Maracaja-Coutinho; Lennart Randau
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

9.  NQO-Induced DNA-Less Cell Formation Is Associated with Chromatin Protein Degradation and Dependent on A0A1-ATPase in Sulfolobus.

Authors:  Wenyuan Han; Yanqun Xu; Xu Feng; Yun X Liang; Li Huang; Yulong Shen; Qunxin She
Journal:  Front Microbiol       Date:  2017-08-14       Impact factor: 5.640

10.  Archaeal imaging: leading the hunt for new discoveries.

Authors:  Alexandre W Bisson-Filho; Jenny Zheng; Ethan Garner
Journal:  Mol Biol Cell       Date:  2018-07-15       Impact factor: 4.138

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