Literature DB >> 26883872

3-D imaging mass spectrometry of protein distributions in mouse Neurofibromatosis 1 (NF1)-associated optic glioma.

David M G Anderson1, Raf Van de Plas2, Kristie L Rose1, Salisha Hill1, Kevin L Schey1, Anne C Solga3, David H Gutmann3, Richard M Caprioli4.   

Abstract

Neurofibromatosis type 1 (NF1) is a common neurogenetic disorder, in which affected individuals develop tumors of the nervous system. Children with NF1 are particularly prone to brain tumors (gliomas) involving the optic pathway that can result in impaired vision. Since tumor formation and expansion requires a cooperative tumor microenvironment, it is important to identify the cellular and acellular components associated with glioma development and growth. In this study, we used 3-D matrix assisted laser desorption ionization imaging mass spectrometry (MALDI IMS) to measure the distributions of multiple molecular species throughout optic nerve tissue in mice with and without glioma, and to explore their spatial relationships within the 3-D volume of the optic nerve and chiasm. 3-D IMS studies often involve extensive workflows due to the high volume of sections required to generate high quality 3-D images. Herein, we present a workflow for 3-D data acquisition and volume reconstruction using mouse optic nerve tissue. The resulting 3-D IMS data yield both molecular similarities and differences between glioma-bearing and wild-type (WT) tissues, including protein distributions localizing to different anatomical subregions. BIOLOGICAL SIGNIFICANCE: The current work addresses a number of challenges in 3-D MALDI IMS, driven by the small size of the mouse optic nerve and the need to maintain consistency across multiple 2-D IMS experiments. The 3-D IMS data yield both molecular similarities and differences between glioma-bearing and wild-type (WT) tissues, including protein distributions localizing to different anatomical subregions, which could then be targeted for identification and related back to the biology observed in gliomas of the optic nerve.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  3-D imaging; Bottom-up proteomics; Imaging mass spectrometry; MALDI; Optic glioma; Top-down proteomics

Mesh:

Substances:

Year:  2016        PMID: 26883872      PMCID: PMC4983271          DOI: 10.1016/j.jprot.2016.02.004

Source DB:  PubMed          Journal:  J Proteomics        ISSN: 1874-3919            Impact factor:   4.044


  26 in total

1.  Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues.

Authors:  M Stoeckli; P Chaurand; D E Hallahan; R M Caprioli
Journal:  Nat Med       Date:  2001-04       Impact factor: 53.440

2.  High spatial resolution imaging mass spectrometry and classical histology on a single tissue section.

Authors:  Fabian Deutskens; Junhai Yang; Richard M Caprioli
Journal:  J Mass Spectrom       Date:  2011-06       Impact factor: 1.982

3.  Expression patterns of LIS1, dynein and their interaction partners dynactin, NudE, NudEL and NudC in human gliomas suggest roles in invasion and proliferation.

Authors:  Satoshi O Suzuki; Richard J McKenney; Shin-ya Mawatari; Masashi Mizuguchi; Atsushi Mikami; Toru Iwaki; James E Goldman; Peter Canoll; Richard B Vallee
Journal:  Acta Neuropathol       Date:  2007-01-13       Impact factor: 17.088

4.  Proteomic analysis of urine exosomes by multidimensional protein identification technology (MudPIT).

Authors:  Zhen Wang; Salisha Hill; James M Luther; David L Hachey; Kevin L Schey
Journal:  Proteomics       Date:  2011-12-16       Impact factor: 3.984

5.  Molecular imaging of biological samples: localization of peptides and proteins using MALDI-TOF MS.

Authors:  R M Caprioli; T B Farmer; J Gile
Journal:  Anal Chem       Date:  1997-12-01       Impact factor: 6.986

6.  Increased c-Jun-NH2-kinase signaling in neurofibromatosis-1 heterozygous microglia drives microglia activation and promotes optic glioma proliferation.

Authors:  Girish C Daginakatte; Scott M Gianino; Nina W Zhao; Alexander S Parsadanian; David H Gutmann
Journal:  Cancer Res       Date:  2008-12-15       Impact factor: 12.701

7.  Reduced microglial CX3CR1 expression delays neurofibromatosis-1 glioma formation.

Authors:  Winnie W Pong; Samantha B Higer; Scott M Gianino; Ryan J Emnett; David H Gutmann
Journal:  Ann Neurol       Date:  2013-02-19       Impact factor: 10.422

8.  Spatially-directed protein identification from tissue sections by top-down LC-MS/MS with electron transfer dissociation.

Authors:  Kevin L Schey; David M Anderson; Kristie L Rose
Journal:  Anal Chem       Date:  2013-07-02       Impact factor: 6.986

9.  Microbial metabolic exchange in 3D.

Authors:  Jeramie D Watrous; Vanessa V Phelan; Cheng-Chih Hsu; Wilna J Moree; Brendan M Duggan; Theodore Alexandrov; Pieter C Dorrestein
Journal:  ISME J       Date:  2013-01-03       Impact factor: 10.302

10.  Molecular imaging of proteins in tissues by mass spectrometry.

Authors:  Erin H Seeley; Richard M Caprioli
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-05       Impact factor: 11.205

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  7 in total

Review 1.  Advances in MALDI imaging mass spectrometry of proteins in cardiac tissue, including the heart valve.

Authors:  Peggi M Angel; H Scott Baldwin; Danielle Gottlieb Sen; Yan Ru Su; John E Mayer; David Bichell; Richard R Drake
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-03-21       Impact factor: 3.036

Review 2.  Unsupervised machine learning for exploratory data analysis in imaging mass spectrometry.

Authors:  Nico Verbeeck; Richard M Caprioli; Raf Van de Plas
Journal:  Mass Spectrom Rev       Date:  2019-10-11       Impact factor: 10.946

3.  Lipid Landscape of the Human Retina and Supporting Tissues Revealed by High-Resolution Imaging Mass Spectrometry.

Authors:  David M G Anderson; Jeffrey D Messinger; Nathan H Patterson; Emilio S Rivera; Ankita Kotnala; Jeffrey M Spraggins; Richard M Caprioli; Christine A Curcio; Kevin L Schey
Journal:  J Am Soc Mass Spectrom       Date:  2020-07-24       Impact factor: 3.109

4.  The Ups and Downs of Repeated Cleavage and Internal Fragment Production in Top-Down Proteomics.

Authors:  Yana A Lyon; Dylan Riggs; Luca Fornelli; Philip D Compton; Ryan R Julian
Journal:  J Am Soc Mass Spectrom       Date:  2017-10-16       Impact factor: 3.109

5.  3D MALDI Mass Spectrometry Imaging of a Single Cell: Spatial Mapping of Lipids in the Embryonic Development of Zebrafish.

Authors:  Maria Emilia Dueñas; Jeffrey J Essner; Young Jin Lee
Journal:  Sci Rep       Date:  2017-11-02       Impact factor: 4.379

6.  An overview of image registration for aligning mass spectrometry imaging with clinically relevant imaging modalities.

Authors:  Benjamin Balluff; Ron M A Heeren; Alan M Race
Journal:  J Mass Spectrom Adv Clin Lab       Date:  2021-12-18

Review 7.  Matrix-Assisted Laser Desorption/Ionisation Mass Spectrometry Imaging in the Study of Gastric Cancer: A Mini Review.

Authors:  Andrew Smith; Isabella Piga; Manuel Galli; Martina Stella; Vanna Denti; Marina Del Puppo; Fulvio Magni
Journal:  Int J Mol Sci       Date:  2017-12-01       Impact factor: 5.923

  7 in total

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