Literature DB >> 26883182

The devil is in the details: the effect of population structure on demographic inference.

P Orozco-terWengel1.   

Abstract

Mesh:

Year:  2016        PMID: 26883182      PMCID: PMC4806699          DOI: 10.1038/hdy.2016.9

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


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  13 in total

1.  The genetical structure of populations.

Authors:  S WRIGHT
Journal:  Ann Eugen       Date:  1951-03

2.  Bayesian identification of admixture events using multilocus molecular markers.

Authors:  Jukka Corander; Pekka Marttinen
Journal:  Mol Ecol       Date:  2006-09       Impact factor: 6.185

3.  Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?

Authors:  Raphael Leblois; Arnaud Estoup; Rejane Streiff
Journal:  Mol Ecol       Date:  2006-10       Impact factor: 6.185

4.  The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations.

Authors:  Thomas Städler; Bernhard Haubold; Carlos Merino; Wolfgang Stephan; Peter Pfaffelhuber
Journal:  Genetics       Date:  2009-02-23       Impact factor: 4.562

5.  Fast model-based estimation of ancestry in unrelated individuals.

Authors:  David H Alexander; John Novembre; Kenneth Lange
Journal:  Genome Res       Date:  2009-07-31       Impact factor: 9.043

6.  Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle.

Authors:  Xiangjiang Zhan; Shengkai Pan; Junyi Wang; Andrew Dixon; Jing He; Margit G Muller; Peixiang Ni; Li Hu; Yuan Liu; Haolong Hou; Yuanping Chen; Jinquan Xia; Qiong Luo; Pengwei Xu; Ying Chen; Shengguang Liao; Changchang Cao; Shukun Gao; Zhaobao Wang; Zhen Yue; Guoqing Li; Ye Yin; Nick C Fox; Jun Wang; Michael W Bruford
Journal:  Nat Genet       Date:  2013-03-24       Impact factor: 38.330

7.  Inference of human population history from individual whole-genome sequences.

Authors:  Heng Li; Richard Durbin
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

8.  Inferring human population size and separation history from multiple genome sequences.

Authors:  Stephan Schiffels; Richard Durbin
Journal:  Nat Genet       Date:  2014-06-22       Impact factor: 38.330

9.  The confounding effect of population structure on Bayesian skyline plot inferences of demographic history.

Authors:  Rasmus Heller; Lounes Chikhi; Hans Redlef Siegismund
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

10.  Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:  Martien A M Groenen; Alan L Archibald; Hirohide Uenishi; Christopher K Tuggle; Yasuhiro Takeuchi; Max F Rothschild; Claire Rogel-Gaillard; Chankyu Park; Denis Milan; Hendrik-Jan Megens; Shengting Li; Denis M Larkin; Heebal Kim; Laurent A F Frantz; Mario Caccamo; Hyeonju Ahn; Bronwen L Aken; Anna Anselmo; Christian Anthon; Loretta Auvil; Bouabid Badaoui; Craig W Beattie; Christian Bendixen; Daniel Berman; Frank Blecha; Jonas Blomberg; Lars Bolund; Mirte Bosse; Sara Botti; Zhan Bujie; Megan Bystrom; Boris Capitanu; Denise Carvalho-Silva; Patrick Chardon; Celine Chen; Ryan Cheng; Sang-Haeng Choi; William Chow; Richard C Clark; Christopher Clee; Richard P M A Crooijmans; Harry D Dawson; Patrice Dehais; Fioravante De Sapio; Bert Dibbits; Nizar Drou; Zhi-Qiang Du; Kellye Eversole; João Fadista; Susan Fairley; Thomas Faraut; Geoffrey J Faulkner; Katie E Fowler; Merete Fredholm; Eric Fritz; James G R Gilbert; Elisabetta Giuffra; Jan Gorodkin; Darren K Griffin; Jennifer L Harrow; Alexander Hayward; Kerstin Howe; Zhi-Liang Hu; Sean J Humphray; Toby Hunt; Henrik Hornshøj; Jin-Tae Jeon; Patric Jern; Matthew Jones; Jerzy Jurka; Hiroyuki Kanamori; Ronan Kapetanovic; Jaebum Kim; Jae-Hwan Kim; Kyu-Won Kim; Tae-Hun Kim; Greger Larson; Kyooyeol Lee; Kyung-Tai Lee; Richard Leggett; Harris A Lewin; Yingrui Li; Wansheng Liu; Jane E Loveland; Yao Lu; Joan K Lunney; Jian Ma; Ole Madsen; Katherine Mann; Lucy Matthews; Stuart McLaren; Takeya Morozumi; Michael P Murtaugh; Jitendra Narayan; Dinh Truong Nguyen; Peixiang Ni; Song-Jung Oh; Suneel Onteru; Frank Panitz; Eung-Woo Park; Hong-Seog Park; Geraldine Pascal; Yogesh Paudel; Miguel Perez-Enciso; Ricardo Ramirez-Gonzalez; James M Reecy; Sandra Rodriguez-Zas; Gary A Rohrer; Lauretta Rund; Yongming Sang; Kyle Schachtschneider; Joshua G Schraiber; John Schwartz; Linda Scobie; Carol Scott; Stephen Searle; Bertrand Servin; Bruce R Southey; Goran Sperber; Peter Stadler; Jonathan V Sweedler; Hakim Tafer; Bo Thomsen; Rashmi Wali; Jian Wang; Jun Wang; Simon White; Xun Xu; Martine Yerle; Guojie Zhang; Jianguo Zhang; Jie Zhang; Shuhong Zhao; Jane Rogers; Carol Churcher; Lawrence B Schook
Journal:  Nature       Date:  2012-11-15       Impact factor: 49.962

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  10 in total

1.  The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects.

Authors:  Parul Johri; Kellen Riall; Hannes Becher; Laurent Excoffier; Brian Charlesworth; Jeffrey D Jensen
Journal:  Mol Biol Evol       Date:  2021-06-25       Impact factor: 16.240

Review 2.  On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements.

Authors:  Yann Bourgeois; Stéphane Boissinot
Journal:  Genes (Basel)       Date:  2019-05-30       Impact factor: 4.096

3.  The impact of purifying and background selection on the inference of population history: problems and prospects.

Authors:  Parul Johri; Kellen Riall; Hannes Becher; Laurent Excoffier; Brian Charlesworth; Jeffrey D Jensen
Journal:  bioRxiv       Date:  2021-01-18

4.  Estimating divergence times from DNA sequences.

Authors:  Per Sjödin; James McKenna; Mattias Jakobsson
Journal:  Genetics       Date:  2021-04-15       Impact factor: 4.562

5.  Conservation Genomics of Two Threatened Subspecies of Northern Giraffe: The West African and the Kordofan Giraffe.

Authors:  Raphael T F Coimbra; Sven Winter; Barbara Mitchell; Julian Fennessy; Axel Janke
Journal:  Genes (Basel)       Date:  2022-01-25       Impact factor: 4.096

6.  Rainfall and sea level drove the expansion of seasonally flooded habitats and associated bird populations across Amazonia.

Authors:  A O Sawakuchi; E D Schultz; F N Pupim; D J Bertassoli; D F Souza; D F Cunha; C E Mazoca; M P Ferreira; C H Grohmann; I D Wahnfried; C M Chiessi; F W Cruz; R P Almeida; C C Ribas
Journal:  Nat Commun       Date:  2022-08-23       Impact factor: 17.694

7.  Comparison of Single Genome and Allele Frequency Data Reveals Discordant Demographic Histories.

Authors:  Annabel C Beichman; Tanya N Phung; Kirk E Lohmueller
Journal:  G3 (Bethesda)       Date:  2017-11-06       Impact factor: 3.154

8.  Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals.

Authors:  Giulia I M Pasquesi; Richard H Adams; Daren C Card; Drew R Schield; Andrew B Corbin; Blair W Perry; Jacobo Reyes-Velasco; Robert P Ruggiero; Michael W Vandewege; Jonathan A Shortt; Todd A Castoe
Journal:  Nat Commun       Date:  2018-07-17       Impact factor: 14.919

9.  Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads.

Authors:  Ellie E Armstrong; Ryan W Taylor; Stefan Prost; Peter Blinston; Esther van der Meer; Hillary Madzikanda; Olivia Mufute; Roseline Mandisodza-Chikerema; John Stuelpnagel; Claudio Sillero-Zubiri; Dmitri Petrov
Journal:  Gigascience       Date:  2019-02-01       Impact factor: 6.524

10.  Past environmental changes affected lemur population dynamics prior to human impact in Madagascar.

Authors:  Helena Teixeira; Vincent Montade; Jordi Salmona; Julia Metzger; Laurent Bremond; Thomas Kasper; Gerhard Daut; Sylvie Rouland; Sandratrinirainy Ranarilalatiana; Romule Rakotondravony; Lounès Chikhi; Hermann Behling; Ute Radespiel
Journal:  Commun Biol       Date:  2021-09-15
  10 in total

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