Literature DB >> 26882269

Bacterial communities from Arctic seasonal sea ice are more compositionally variable than those from multi-year sea ice.

Ido Hatam1, Benjamin Lange2,3,4, Justin Beckers3, Christian Haas3,5, Brian Lanoil1.   

Abstract

Arctic sea ice can be classified into two types: seasonal ice (first-year ice, FYI) and multi-year ice (MYI). Despite striking differences in the physical and chemical characteristics of FYI and MYI, and the key role sea ice bacteria play in biogeochemical cycles of the Arctic Ocean, there are a limited number of studies comparing the bacterial communities from these two ice types. Here, we compare the membership and composition of bacterial communities from FYI and MYI sampled north of Ellesmere Island, Canada. Our results show that communities from both ice types were dominated by similar class-level phylogenetic groups. However, at the operational taxonomic unit (OTU) level, communities from MYI and FYI differed in both membership and composition. Communities from MYI sites had consistent structure, with similar membership (presence/absence) and composition (OTU abundance) independent of location and year of sample. By contrast, communities from FYI were more variable. Although FYI bacterial communities from different locations and different years shared similar membership, they varied significantly in composition. Should these findings apply to sea ice across the Arctic, we predict increased compositional variability in sea ice bacterial communities resulting from the ongoing transition from predominantly MYI to FYI, which may impact nutrient dynamics in the Arctic Ocean.

Entities:  

Mesh:

Year:  2016        PMID: 26882269      PMCID: PMC5030698          DOI: 10.1038/ismej.2016.4

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  32 in total

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Authors:  Mark C Serreze; Marika M Holland; Julienne Stroeve
Journal:  Science       Date:  2007-03-16       Impact factor: 47.728

2.  Ecological genomics of marine Roseobacters.

Authors:  M A Moran; R Belas; M A Schell; J M González; F Sun; S Sun; B J Binder; J Edmonds; W Ye; B Orcutt; E C Howard; C Meile; W Palefsky; A Goesmann; Q Ren; I Paulsen; L E Ulrich; L S Thompson; E Saunders; A Buchan
Journal:  Appl Environ Microbiol       Date:  2007-05-25       Impact factor: 4.792

3.  Accurate determination of microbial diversity from 454 pyrosequencing data.

Authors:  Christopher Quince; Anders Lanzén; Thomas P Curtis; Russell J Davenport; Neil Hall; Ian M Head; L Fiona Read; William T Sloan
Journal:  Nat Methods       Date:  2009-08-09       Impact factor: 28.547

4.  Sea ice microbial production supports Ross Sea benthic communities: influence of a small but stable subsidy.

Authors:  S R Wing; R J McLeod; J J Leichter; R D Frew; M D Lamare
Journal:  Ecology       Date:  2012-02       Impact factor: 5.499

5.  Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class Proteobacteria.

Authors:  J M González; R P Kiene; M A Moran
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

6.  Massive phytoplankton blooms under Arctic sea ice.

Authors:  Kevin R Arrigo; Donald K Perovich; Robert S Pickart; Zachary W Brown; Gert L van Dijken; Kate E Lowry; Matthew M Mills; Molly A Palmer; William M Balch; Frank Bahr; Nicholas R Bates; Claudia Benitez-Nelson; Bruce Bowler; Emily Brownlee; Jens K Ehn; Karen E Frey; Rebecca Garley; Samuel R Laney; Laura Lubelczyk; Jeremy Mathis; Atsushi Matsuoka; B Greg Mitchell; G W K Moore; Eva Ortega-Retuerta; Sharmila Pal; Chris M Polashenski; Rick A Reynolds; Brian Schieber; Heidi M Sosik; Michael Stephens; James H Swift
Journal:  Science       Date:  2012-06-07       Impact factor: 47.728

7.  Ironing out the wrinkles in the rare biosphere through improved OTU clustering.

Authors:  Susan M Huse; David Mark Welch; Hilary G Morrison; Mitchell L Sogin
Journal:  Environ Microbiol       Date:  2010-03-11       Impact factor: 5.491

8.  Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov.

Authors:  J P Bowman; S A McCammon; T Lewis; J H Skerratt; J L Brown; D S Nichols; T A McMeekin
Journal:  Microbiology       Date:  1998-06       Impact factor: 2.777

9.  Removing noise from pyrosequenced amplicons.

Authors:  Christopher Quince; Anders Lanzen; Russell J Davenport; Peter J Turnbaugh
Journal:  BMC Bioinformatics       Date:  2011-01-28       Impact factor: 3.169

10.  Light-stimulated growth of proteorhodopsin-bearing sea-ice psychrophile Psychroflexus torquis is salinity dependent.

Authors:  Shi Feng; Shane M Powell; Richard Wilson; John P Bowman
Journal:  ISME J       Date:  2013-06-20       Impact factor: 10.302

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  5 in total

1.  An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community.

Authors:  Eeva Eronen-Rasimus; Anne-Mari Luhtanen; Janne-Markus Rintala; Bruno Delille; Gerhard Dieckmann; Antti Karkman; Jean-Louis Tison
Journal:  ISME J       Date:  2017-07-14       Impact factor: 10.302

2.  Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85-90 °N.

Authors:  Beatriz Fernández-Gómez; Beatriz Díez; Martin F Polz; José Ignacio Arroyo; Fernando D Alfaro; Germán Marchandon; Cynthia Sanhueza; Laura Farías; Nicole Trefault; Pablo A Marquet; Marco A Molina-Montenegro; Peter Sylvander; Pauline Snoeijs-Leijonmalm
Journal:  ISME J       Date:  2018-09-18       Impact factor: 10.302

3.  Comparison of Two 16S rRNA Primers (V3-V4 and V4-V5) for Studies of Arctic Microbial Communities.

Authors:  Eduard Fadeev; Magda G Cardozo-Mino; Josephine Z Rapp; Christina Bienhold; Ian Salter; Verena Salman-Carvalho; Massimiliano Molari; Halina E Tegetmeyer; Pier Luigi Buttigieg; Antje Boetius
Journal:  Front Microbiol       Date:  2021-02-16       Impact factor: 5.640

4.  Effects of Ice-Algal Aggregate Export on the Connectivity of Bacterial Communities in the Central Arctic Ocean.

Authors:  Josephine Z Rapp; Mar Fernández-Méndez; Christina Bienhold; Antje Boetius
Journal:  Front Microbiol       Date:  2018-05-18       Impact factor: 5.640

5.  Wintertime Simulations Induce Changes in the Structure, Diversity and Function of Antarctic Sea Ice-Associated Microbial Communities.

Authors:  Violetta La Cono; Francesco Smedile; Francesca Crisafi; Laura Marturano; Stepan V Toshchakov; Gina La Spada; Ninh Khắc Bản; Michail M Yakimov
Journal:  Microorganisms       Date:  2022-03-15
  5 in total

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