Literature DB >> 26881940

Genome size variation in the genus Avena.

Honghai Yan1,2, Sara L Martin1, Wubishet A Bekele1, Robert G Latta3, Axel Diederichsen4, Yuanying Peng2, Nicholas A Tinker1.   

Abstract

Genome size is an indicator of evolutionary distance and a metric for genome characterization. Here, we report accurate estimates of genome size in 99 accessions from 26 species of Avena. We demonstrate that the average genome size of C genome diploid species (2C = 10.26 pg) is 15% larger than that of A genome species (2C = 8.95 pg), and that this difference likely accounts for a progression of size among tetraploid species, where AB < AC < CC (average 2C = 16.76, 18.60, and 21.78 pg, respectively). All accessions from three hexaploid species with the ACD genome configuration had similar genome sizes (average 2C = 25.74 pg). Genome size was mostly consistent within species and in general agreement with current information about evolutionary distance among species. Results also suggest that most of the polyploid species in Avena have experienced genome downsizing in relation to their diploid progenitors. Genome size measurements could provide additional quality control for species identification in germplasm collections, especially in cases where diploid and polyploid species have similar morphology.

Keywords:  avoine; cytométrie en flux; flow cytometry; noyau; nucleus; oat; polyploidy; polyploïdie

Mesh:

Substances:

Year:  2016        PMID: 26881940     DOI: 10.1139/gen-2015-0132

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  19 in total

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5.  Phylogenetic relationships in the genus Avena based on the nuclear Pgk1 gene.

Authors:  Yuanying Peng; Pingping Zhou; Jun Zhao; Junzhuo Li; Shikui Lai; Nicholas A Tinker; Shu Liao; Honghai Yan
Journal:  PLoS One       Date:  2018-11-08       Impact factor: 3.240

6.  Identification of molecular markers for the Pc39 gene conferring resistance to crown rust in oat.

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7.  High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat.

Authors:  Honghai Yan; Wubishet A Bekele; Charlene P Wight; Yuanying Peng; Tim Langdon; Robert G Latta; Yong-Bi Fu; Axel Diederichsen; Catherine J Howarth; Eric N Jellen; Brian Boyle; Yuming Wei; Nicholas A Tinker
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8.  Haplotype-based genotyping-by-sequencing in oat genome research.

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9.  Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species.

Authors:  Peter J Maughan; Rebekah Lee; Rachel Walstead; Robert J Vickerstaff; Melissa C Fogarty; Cory R Brouwer; Robert R Reid; Jeremy J Jay; Wubishet A Bekele; Eric W Jackson; Nicholas A Tinker; Tim Langdon; Jessica A Schlueter; Eric N Jellen
Journal:  BMC Biol       Date:  2019-11-22       Impact factor: 7.431

10.  Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny.

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Journal:  BMC Plant Biol       Date:  2020-09-02       Impact factor: 4.215

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