Literature DB >> 26879042

Small protein domains fold inside the ribosome exit tunnel.

Jacopo Marino1, Gunnar von Heijne2,3, Roland Beckmann1.   

Abstract

Cotranslational folding of small protein domains within the ribosome exit tunnel may be an important cellular strategy to avoid protein misfolding. However, the pathway of cotranslational folding has so far been described only for a few proteins, and therefore, it is unclear whether folding in the ribosome exit tunnel is a common feature for small protein domains. Here, we have analyzed nine small protein domains and determined at which point during translation their folding generates sufficient force on the nascent chain to release translational arrest by the SecM arrest peptide, both in vitro and in live E. coli cells. We find that all nine protein domains initiate folding while still located well within the ribosome exit tunnel.
© 2016 Federation of European Biochemical Societies.

Entities:  

Keywords:  GFP; SecM; cotranslational protein folding; fast-folding domains; ribosome exit tunnel; translational arrest

Mesh:

Substances:

Year:  2016        PMID: 26879042     DOI: 10.1002/1873-3468.12098

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  33 in total

1.  Mechanochemistry in Translation.

Authors:  Sarah E Leininger; Karthik Narayan; Carol Deutsch; Edward P O'Brien
Journal:  Biochemistry       Date:  2019-06-11       Impact factor: 3.162

2.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

Review 3.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

4.  Effects of protein size, thermodynamic stability, and net charge on cotranslational folding on the ribosome.

Authors:  José Arcadio Farías-Rico; Frida Ruud Selin; Ioanna Myronidi; Marie Frühauf; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-17       Impact factor: 11.205

5.  Charge Interactions Can Dominate Coupled Folding and Binding on the Ribosome.

Authors:  Jacopo Marino; Karin J Buholzer; Franziska Zosel; Daniel Nettels; Benjamin Schuler
Journal:  Biophys J       Date:  2018-08-15       Impact factor: 4.033

6.  Effect of Nascent Peptide Steric Bulk on Elongation Kinetics in the Ribosome Exit Tunnel.

Authors:  Pengse Po; Erin Delaney; Howard Gamper; D Miklos Szantai-Kis; Lee Speight; LiWei Tu; Andrey Kosolapov; E James Petersson; Ya-Ming Hou; Carol Deutsch
Journal:  J Mol Biol       Date:  2017-05-05       Impact factor: 5.469

7.  Origins of the Mechanochemical Coupling of Peptide Bond Formation to Protein Synthesis.

Authors:  Benjamin Fritch; Andrey Kosolapov; Phillip Hudson; Daniel A Nissley; H Lee Woodcock; Carol Deutsch; Edward P O'Brien
Journal:  J Am Chem Soc       Date:  2018-04-06       Impact factor: 15.419

Review 8.  Folding up and Moving on-Nascent Protein Folding on the Ribosome.

Authors:  Christian M Kaiser; Kaixian Liu
Journal:  J Mol Biol       Date:  2018-07-05       Impact factor: 5.469

Review 9.  Quality over quantity: optimizing co-translational protein folding with non-'optimal' synonymous codons.

Authors:  Giselle N Jacobson; Patricia L Clark
Journal:  Curr Opin Struct Biol       Date:  2016-06-16       Impact factor: 6.809

10.  Determinants of Helix Formation for a Kv1.3 Transmembrane Segment inside the Ribosome Exit Tunnel.

Authors:  LiWei Tu; Carol Deutsch
Journal:  J Mol Biol       Date:  2017-05-04       Impact factor: 5.469

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