Literature DB >> 26876875

Stepping into the omics era: Opportunities and challenges for biomaterials science and engineering.

Nathalie Groen1, Murat Guvendiren2, Herschel Rabitz3, William J Welsh4, Joachim Kohn2,5, Jan de Boer1,6.   

Abstract

The research paradigm in biomaterials science and engineering is evolving from using low-throughput and iterative experimental designs towards high-throughput experimental designs for materials optimization and the evaluation of materials properties. Computational science plays an important role in this transition. With the emergence of the omics approach in the biomaterials field, referred to as materiomics, high-throughput approaches hold the promise of tackling the complexity of materials and understanding correlations between material properties and their effects on complex biological systems. The intrinsic complexity of biological systems is an important factor that is often oversimplified when characterizing biological responses to materials and establishing property-activity relationships. Indeed, in vitro tests designed to predict in vivo performance of a given biomaterial are largely lacking as we are not able to capture the biological complexity of whole tissues in an in vitro model. In this opinion paper, we explain how we reached our opinion that converging genomics and materiomics into a new field would enable a significant acceleration of the development of new and improved medical devices. The use of computational modeling to correlate high-throughput gene expression profiling with high throughput combinatorial material design strategies would add power to the analysis of biological effects induced by material properties. We believe that this extra layer of complexity on top of high-throughput material experimentation is necessary to tackle the biological complexity and further advance the biomaterials field. STATEMENT OF SIGNIFICANCE: In this opinion paper, we postulate that converging genomics and materiomics into a new field would enable a significant acceleration of the development of new and improved medical devices. The use of computational modeling to correlate high-throughput gene expression profiling with high throughput combinatorial material design strategies would add power to the analysis of biological effects induced by material properties. We believe that this extra layer of complexity on top of high-throughput material experimentation is necessary to tackle the biological complexity and further advance the biomaterials field.
Copyright © 2016. Published by Elsevier Ltd.

Entities:  

Keywords:  Combinatorial screening; Computational modeling; Converging omics fields; Genomics; High-throughput experimentation; Materiomics; Transcriptomics

Mesh:

Substances:

Year:  2016        PMID: 26876875      PMCID: PMC4830461          DOI: 10.1016/j.actbio.2016.02.015

Source DB:  PubMed          Journal:  Acta Biomater        ISSN: 1742-7061            Impact factor:   8.947


  75 in total

1.  Microfluidic patterning of cells in extracellular matrix biopolymers: effects of channel size, cell type, and matrix composition on pattern integrity.

Authors:  Wei Tan; Tejal A Desai
Journal:  Tissue Eng       Date:  2003-04

2.  Osteoblast-like cells complete osteoclastic bone resorption and form new mineralized bone matrix in vitro.

Authors:  M T K Mulari; Q Qu; P L Härkönen; H K Väänänen
Journal:  Calcif Tissue Int       Date:  2004-09       Impact factor: 4.333

Review 3.  Bone substitutes in the Netherlands - a systematic literature review.

Authors:  Johan Van der Stok; Esther M M Van Lieshout; Youssef El-Massoudi; Gerdine H Van Kralingen; Peter Patka
Journal:  Acta Biomater       Date:  2010-08-03       Impact factor: 8.947

Review 4.  A new approach to the rationale discovery of polymeric biomaterials.

Authors:  Joachim Kohn; William J Welsh; Doyle Knight
Journal:  Biomaterials       Date:  2007-07-20       Impact factor: 12.479

5.  Combinatorial screening of cell proliferation on poly(L-lactic acid)/poly(D,L-lactic acid) blends.

Authors:  Carl G Simon; Naomi Eidelman; Scott B Kennedy; Amit Sehgal; Chetan A Khatri; Newell R Washburn
Journal:  Biomaterials       Date:  2005-12       Impact factor: 12.479

6.  3D microenvironment as essential element for osteoinduction by biomaterials.

Authors:  Pamela Habibovic; Huipin Yuan; Chantal M van der Valk; Gert Meijer; Clemens A van Blitterswijk; Klaas de Groot
Journal:  Biomaterials       Date:  2005-06       Impact factor: 12.479

7.  cAMP/PKA pathway activation in human mesenchymal stem cells in vitro results in robust bone formation in vivo.

Authors:  Ramakrishnaiah Siddappa; Anton Martens; Joyce Doorn; Anouk Leusink; Cristina Olivo; Ruud Licht; Linda van Rijn; Claudia Gaspar; Riccardo Fodde; Frank Janssen; Clemens van Blitterswijk; Jan de Boer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-19       Impact factor: 11.205

8.  "Dip-Pen" nanolithography

Authors: 
Journal:  Science       Date:  1999-01-29       Impact factor: 47.728

9.  Genomic expression of mesenchymal stem cells to altered nanoscale topographies.

Authors:  Matthew J Dalby; Abhay Andar; Abhijit Nag; Stanley Affrossman; Rahul Tare; Sara McFarlane; Richard O C Oreffo
Journal:  J R Soc Interface       Date:  2008-09-06       Impact factor: 4.118

10.  A screen for morphological complexity identifies regulators of switch-like transitions between discrete cell shapes.

Authors:  Zheng Yin; Amine Sadok; Heba Sailem; Afshan McCarthy; Xiaofeng Xia; Fuhai Li; Mar Arias Garcia; Louise Evans; Alexis R Barr; Norbert Perrimon; Christopher J Marshall; Stephen T C Wong; Chris Bakal
Journal:  Nat Cell Biol       Date:  2013-06-09       Impact factor: 28.824

View more
  12 in total

Review 1.  Progress in three-dimensional printing with growth factors.

Authors:  Gerry L Koons; Antonios G Mikos
Journal:  J Control Release       Date:  2018-12-20       Impact factor: 9.776

2.  Outlooks on Three-Dimensional Printing for Ocular Biomaterials Research.

Authors:  Owen S Fenton; Marion Paolini; Jason L Andresen; Florence J Müller; Robert Langer
Journal:  J Ocul Pharmacol Ther       Date:  2019-06-18       Impact factor: 2.671

Review 3.  Threats to adhesive/dentin interfacial integrity and next generation bio-enabled multifunctional adhesives.

Authors:  Paulette Spencer; Qiang Ye; Linyong Song; Ranganathan Parthasarathy; Kyle Boone; Anil Misra; Candan Tamerler
Journal:  J Biomed Mater Res B Appl Biomater       Date:  2019-03-20       Impact factor: 3.368

Review 4.  Functional and Biomimetic Materials for Engineering of the Three-Dimensional Cell Microenvironment.

Authors:  Guoyou Huang; Fei Li; Xin Zhao; Yufei Ma; Yuhui Li; Min Lin; Guorui Jin; Tian Jian Lu; Guy M Genin; Feng Xu
Journal:  Chem Rev       Date:  2017-10-09       Impact factor: 60.622

Review 5.  Leveraging advances in biology to design biomaterials.

Authors:  Max Darnell; David J Mooney
Journal:  Nat Mater       Date:  2017-11-24       Impact factor: 43.841

Review 6.  Towards systems tissue engineering: Elucidating the dynamics, spatial coordination, and individual cells driving emergent behaviors.

Authors:  Matthew S Hall; Joseph T Decker; Lonnie D Shea
Journal:  Biomaterials       Date:  2020-06-14       Impact factor: 12.479

Review 7.  Tissue-informed engineering strategies for modeling human pulmonary diseases.

Authors:  Kolene E Bailey; Michael L Floren; Tyler J D'Ovidio; Steven R Lammers; Kurt R Stenmark; Chelsea M Magin
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2018-11-21       Impact factor: 5.464

8.  Proteomic Dissection of Nanotopography-Sensitive Mechanotransductive Signaling Hubs that Foster Neuronal Differentiation in PC12 Cells.

Authors:  Elisa Maffioli; Carsten Schulte; Simona Nonnis; Francesca Grassi Scalvini; Claudio Piazzoni; Cristina Lenardi; Armando Negri; Paolo Milani; Gabriella Tedeschi
Journal:  Front Cell Neurosci       Date:  2018-01-04       Impact factor: 5.505

Review 9.  Recent Advances in Bioink Design for 3D Bioprinting of Tissues and Organs.

Authors:  Shen Ji; Murat Guvendiren
Journal:  Front Bioeng Biotechnol       Date:  2017-04-05

Review 10.  Gradient Material Strategies for Hydrogel Optimization in Tissue Engineering Applications.

Authors:  Laura A Smith Callahan
Journal:  High Throughput       Date:  2018-01-04
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.